PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G04910.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 435aa MW: 46535.2 Da PI: 7.8336

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G04910.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	102	161	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k+ OPUNC03G04910.2 102 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSI 161 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-32	98	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-32	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MGECKVGGGG GGGGGDCLIK LFGKTIPVPE SGAAGDVDKD LQHSGSSTTE PKTQENTLQD 60 STSPPPQPEV VDTEDSSADK NSSENQQQQG DTGNQKEKLK KPDKILPCPR CSSMDTKFCY 120 YNNYNINQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKSKS ISAASHFLQR VRAALPGDPP 180 LYAPVKTNGT VLNFGSDLST LDLTEQMKHL KDKFIPTTSI KNTDEIPVGL CAETKTEESN 240 QMNLKEKVSA DRSPNVAQHP CMNGGAMWPF GVAPPPAYYT SSIAIPFYPA AAAAAYWGCM 300 VPGAWNAPWA PQSQSQSVSS SAASPVSTMT NCFKLGKHPR DGDEELDSKG NGKVWVPKTV 360 RIDDVDEVAR SSIWSLIGIK GDKVGADHGK GCKLAKVFES KDEAKTSTHS AISSLPFMQG 420 NPAALTRSVT FQEGS

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MGECKVGGGG GGGGGDCLIK LFGKTIPVPE SGAAGDVDKD LQHSGSSTTE PKTQENTLQD  60
STSPPPQPEV VDTEDSSADK NSSENQQQQG DTGNQKEKLK KPDKILPCPR CSSMDTKFCY  120
YNNYNINQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKSKS ISAASHFLQR VRAALPGDPP  180
LYAPVKTNGT VLNFGSDLST LDLTEQMKHL KDKFIPTTSI KNTDEIPVGL CAETKTEESN  240
QMNLKEKVSA DRSPNVAQHP CMNGGAMWPF GVAPPPAYYT SSIAIPFYPA AAAAAYWGCM  300
VPGAWNAPWA PQSQSQSVSS SAASPVSTMT NCFKLGKHPR DGDEELDSKG NGKVWVPKTV  360
RIDDVDEVAR SSIWSLIGIK GDKVGADHGK GCKLAKVFES KDEAKTSTHS AISSLPFMQG  420
NPAALTRSVT FQEGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060900	0.0	AK060900.1 Oryza sativa Japonica Group cDNA clone:001-035-D05, full insert sequence.
GenBank	AK104523	0.0	AK104523.1 Oryza sativa Japonica Group cDNA clone:006-303-F03, full insert sequence.
GenBank	AY224429	0.0	AY224429.1 Oryza sativa (japonica cultivar-group) isolate 20575 putative H-protein promoter binding factor-2a mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631794.1	0.0	cyclic dof factor 1
TrEMBL	A0A0E0K9B2	0.0	A0A0E0K9B2_ORYPU; Uncharacterized protein
STRING	OPUNC03G04910.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	8e-65	cycling DOF factor 2