PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G04910.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 496aa MW: 52993.4 Da PI: 6.5083

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G04910.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.6e-39	163	222	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k+ OPUNC03G04910.1 163 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSI 222 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-32	159	220	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.7E-32	165	221	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	167	221	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	169	205	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MENFIQEIQQ ESRAILLLSP PPYELVVVGV GVGVGLSSPG VARCGTREAA AEKSETGFEE 60 EMGECKVGGG GGGGGGDCLI KLFGKTIPVP ESGAAGDVDK DLQHSGSSTT EPKTQENTLQ 120 DSTSPPPQPE VVDTEDSSAD KNSSENQQQQ GDTGNQKEKL KKPDKILPCP RCSSMDTKFC 180 YYNNYNINQP RHFCKNCQRY WTAGGAMRNV PVGAGRRKSK SISAASHFLQ RVRAALPGDP 240 PLYAPVKTNG TVLNFGSDLS TLDLTEQMKH LKDKFIPTTS IKNTDEIPVG LCAETKTEES 300 NQMNLKEKVS ADRSPNVAQH PCMNGGAMWP FGVAPPPAYY TSSIAIPFYP AAAAAAYWGC 360 MVPGAWNAPW APQSQSQSVS SSAASPVSTM TNCFKLGKHP RDGDEELDSK GNGKVWVPKT 420 VRIDDVDEVA RSSIWSLIGI KGDKVGADHG KGCKLAKVFE SKDEAKTSTH SAISSLPFMQ 480 GNPAALTRSV TFQEGS

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MENFIQEIQQ ESRAILLLSP PPYELVVVGV GVGVGLSSPG VARCGTREAA AEKSETGFEE  60
EMGECKVGGG GGGGGGDCLI KLFGKTIPVP ESGAAGDVDK DLQHSGSSTT EPKTQENTLQ  120
DSTSPPPQPE VVDTEDSSAD KNSSENQQQQ GDTGNQKEKL KKPDKILPCP RCSSMDTKFC  180
YYNNYNINQP RHFCKNCQRY WTAGGAMRNV PVGAGRRKSK SISAASHFLQ RVRAALPGDP  240
PLYAPVKTNG TVLNFGSDLS TLDLTEQMKH LKDKFIPTTS IKNTDEIPVG LCAETKTEES  300
NQMNLKEKVS ADRSPNVAQH PCMNGGAMWP FGVAPPPAYY TSSIAIPFYP AAAAAAYWGC  360
MVPGAWNAPW APQSQSQSVS SSAASPVSTM TNCFKLGKHP RDGDEELDSK GNGKVWVPKT  420
VRIDDVDEVA RSSIWSLIGI KGDKVGADHG KGCKLAKVFE SKDEAKTSTH SAISSLPFMQ  480
GNPAALTRSV TFQEGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060900	0.0	AK060900.1 Oryza sativa Japonica Group cDNA clone:001-035-D05, full insert sequence.
GenBank	AK104523	0.0	AK104523.1 Oryza sativa Japonica Group cDNA clone:006-303-F03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631794.1	0.0	cyclic dof factor 1
TrEMBL	A0A0E0K9B2	0.0	A0A0E0K9B2_ORYPU; Uncharacterized protein
STRING	OPUNC03G04910.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-64	cycling DOF factor 2