PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G04600.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 677aa    MW: 72742.1 Da    PI: 6.7727
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G04600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-084404771954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA+++gL+  qV++WF N R +
  OPUNC03G04600.1 440 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 477
                      554459******************************88 PP
2BELL111.25.8e-36302373172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erq+lq+k + L+ +l++Vd+rY++y++q+q+v+ssF+avag g+akpY +lAl++iSrhFr+L+dai  q+
  OPUNC03G04600.1 302 ERQDLQNKVTALMAMLDQVDRRYRHYHHQMQIVMSSFDAVAGGGAAKPYMALALQTISRHFRSLRDAIGAQV 373
                      799*****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-46227371IPR006563POX domain
PfamPF075264.3E-48232369IPR006563POX domain
PROSITE profilePS5007112.001418481IPR001356Homeobox domain
CDDcd000864.14E-12421482No hitNo description
SMARTSM003891.7E-9421485IPR001356Homeobox domain
SuperFamilySSF466895.56E-17422488IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27424487IPR009057Homeodomain-like
PfamPF059205.5E-17438477IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MASWVGIQGD SVRQRLIGGS QSLGSSLSPF WVVSVILLEL SCSSSLLGLK VDFCRGTAKA  60
LGIVLQKVQQ SEAYCPSLQL KPKTESFIRK MATFFSSSTN QRDLTGSGGD DMSFHHYPPP  120
SNPYSDSSAG GLIPLPATIV SQSHIAHGGG DEPAAFRETP TTDGGEMGLQ TQLLMANGAA  180
ARGHQGGLSL SLGTQVPVSL YQYRPAGMAA ASLLSPSQSP VVGRSAQNSI YVQNSRFLRA  240
ARELLDEVVN VRDAIKRKGD KNQGKDSGEW KGDAAADKSD DKAGSNPQEQ ESNSAPELSP  300
SERQDLQNKV TALMAMLDQV DRRYRHYHHQ MQIVMSSFDA VAGGGAAKPY MALALQTISR  360
HFRSLRDAIG AQVQSARRSL GEQDTSAQGG GLSRLRYIDQ QLRQQRAMQQ FGMMQQPQHA  420
WRPQRGLPES AVSVLRAWLF EHFLHPYPKD SEKLMLARQT GLSRGQVSNW FINARVRLWK  480
PMIEEMYKEE FGAEMDSNSS SENAGGKGKD EAISSEDRDE FQSPSSVHAG VAGQLNPFKS  540
EAIGGLDVGV GVVGLSSCLD GAMGTYATGL NLNHHVHPGA GGNTGTSLLH DALQAAHHHH  600
GGDARFVSYG DMADLGGGYD GGSVSLTLGL QHCNNAGPVP AEQQSLLYGS AGDFDYMNGS  660
DDRQRFGPSQ LLHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-17427484158Homeobox protein Meis1
4xrs_B3e-17427484158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680340.0AK068034.1 Oryza sativa Japonica Group cDNA clone:J013131E13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649449.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_015691112.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLA0A0E0K9740.0A0A0E0K974_ORYPU; Uncharacterized protein
STRINGOPUNC03G04600.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-105BEL1-like homeodomain 6