PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G03510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 186aa MW: 19750.2 Da PI: 6.4849 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.3 | 1.2e-38 | 13 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkCa++Cv+apyf+ae+ +++fa++hk+FGasn kll+++ + +r++++++++yeA+ar+rdPvyG+v++i++lqqql++l+++ OPUNC03G03510.1 13 PCGACKFLRRKCAAECVFAPYFCAEDgAAQFAAIHKVFGASNAAKLLQQVAPGDRSEVAATVTYEAQARLRDPVYGCVAHIFALQQQLATLQVQ 106 7***********************9989****************************************************************** PP DUF260 94 lallkee 100 +a++k++ OPUNC03G03510.1 107 VAQAKTQ 113 **99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.791 | 12 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.0E-37 | 13 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MASSGVGGVP GSPCGACKFL RRKCAAECVF APYFCAEDGA AQFAAIHKVF GASNAAKLLQ 60 QVAPGDRSEV AATVTYEAQA RLRDPVYGCV AHIFALQQQL ATLQVQVAQA KTQVAQTLAA 120 AGMLTATGNP LLQHQQQQQQ AWQMEHESTM TSTQSSGCYS APRSDGSTSL QDMYCFGEQE 180 EGSYSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-33 | 11 | 114 | 9 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-33 | 11 | 114 | 9 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB200235 | 0.0 | AB200235.1 Oryza sativa Japonica Group CRLL1 mRNA for LOB domain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649405.1 | 1e-123 | PREDICTED: LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB7 | 3e-52 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A0E0K8T7 | 1e-133 | A0A0E0K8T7_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G03510.1 | 1e-134 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10262 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 1e-37 | lateral organ boundaries-domain 29 |