PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G02570.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 408aa    MW: 44244.9 Da    PI: 4.8532
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G02570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.2e-12188230754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  OPUNC03G02570.1 188 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 230
                      79*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.129181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-16186259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.45E-5188235No hitNo description
PfamPF000102.0E-9188230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-16188251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MWLSYSPSRS VHSMELDEES FLDELMSLRR EGSAPWQAQY HGDGGMMMSD LLFYGGDGAE  60
ARGGMDASPF QELASMAAPP PQHPHEEFNF DCLSEVCNPY RSCGALVPSE AASQTQTQLT  120
PLRDAMVAEE ETSGDKAPLH GGGSSSSPTF LFGGGAGESS EMMAGIRVGG GGVHPRSKLH  180
GTPSKNLMAE RRRRKRLNDR LSMLRSIVPK ISKMDRTSIL GDTIDYVKEL TERIKTLEEE  240
IGATPEELDL LNTMKDSSSG NNNEMLVRNS TKFDVEKRGS GNTRIEICCP ANPGVLLSTV  300
SALEVLGLEI EQCVVSCFSD FGMQASCLQE DGKRQVVSTD EIKQTLFRSA GYGGSSSTSF  360
LNTPESKLKI CSSIVSFAFV NRYGSRPCDL SNIGFELNAK VPIVCTLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189196ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0600290.0AK060029.1 Oryza sativa Japonica Group cDNA clone:006-303-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629094.10.0transcription factor bHLH93
TrEMBLA0A0E0K8G40.0A0A0E0K8G4_ORYPU; Uncharacterized protein
STRINGOPUNC03G02570.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.17e-64beta HLH protein 93