PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G01680.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 310aa    MW: 34348.8 Da    PI: 6.0508
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G01680.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41.1e-072602932154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp+++++++L +++gL+ +q+ +WF N+R +
  OPUNC03G01680.2 260 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 293
                      469*****************************87 PP
2ELK25.43.3e-09214235122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK +L++++++++ ++++E++
  OPUNC03G01680.2 214 ELKIELKQGFKSRIEDVREEIL 235
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.0E-164892IPR005540KNOX1
PfamPF037901.6E-145090IPR005540KNOX1
SMARTSM012568.8E-25103158IPR005541KNOX2
PfamPF037919.4E-19106157IPR005541KNOX2
PROSITE profilePS512139.132214234IPR005539ELK domain
PROSITE profilePS5007111.693234297IPR001356Homeobox domain
SuperFamilySSF466895.13E-16236300IPR009057Homeodomain-like
SMARTSM003894.9E-10236301IPR001356Homeobox domain
CDDcd000869.30E-12237298No hitNo description
Gene3DG3DSA:1.10.10.604.7E-25241300IPR009057Homeodomain-like
PfamPF059201.1E-17254293IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MQGGDHGGME MGVGFPGGSG ECSSSSATAA AAAAAAAAAA AAEAEERQLL KGEIAVHPLC  60
EQLVAAHVGC LRVATPIDHL PLIDAQLAQS SGLLHSYAAH HRPFLSPHDK QELDSFLAQY  120
MMLLCSFREQ LQQHVRVHAV EAVMACREIE QSLQDLTGAT LEEGTGATMS EDEEETPMLE  180
GAMDMGSDGH DLMGFGPLMP TDSERSLMER VRQELKIELK QGFKSRIEDV REEILRKRRA  240
GKLPGDTTTI LKQWWQQHSK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSQ  300
TSTLKSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290309RKRNWHNNSQTSTLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0618190.0AB061819.1 Oryza sativa Japonica Group HOS66 mRNA for KNOX family class 2 homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628919.10.0homeobox protein knotted-1-like 3
SwissprotQ94LW30.0KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A0E0K8450.0A0A0E0K845_ORYPU; Uncharacterized protein
STRINGOPUNC03G01680.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-139KNOTTED-like homeobox of Arabidopsis thaliana 7