PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G01540.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 312aa MW: 34295.7 Da PI: 10.1874

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G01540.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.6	8.9e-32	37	141	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 f+kv tpsdv+k++rlv+pk++ae++ ++e++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + g+ OPUNC03G01540.1 37 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAASNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEaA 130 89**************************55567889*********************************************6658889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l++ ++r+ OPUNC03G01540.1 131 RGRLFIDWRRR 141 999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.3E-40	30	142	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.8E-29	34	125	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.37E-26	35	122	No hit	No description
SMART	SM01019	2.6E-21	37	142	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-28	37	141	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.367	37	142	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009908	Biological Process	flower development
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MEFITPIVRP SVAVGGGELQ ESGRSLPAEA VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE 60 KYFPLDAASN EKGLLLSFED RTGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV 120 SFGRGVGEAA RGRLFIDWRR RPDVVAALQP PTHRFQLPSS IPFAPWPAHH HHGATGAGAR 180 FLLPPSTPIY DHNRRHAHAV GYDAYAAATS RQVLFYRPLP QQQQQQHPAV VLESVPVRMT 240 AGHAEPSVAS SAPSKRVRLF GVNLDCANSE QDHAGVVGKT APPPQSLQQL PSPPSSSSSS 300 SGKARCSLNL DL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	6e-65	32	144	3	116	B3 domain-containing transcription factor NGA1
5os9_B	6e-65	32	144	3	116	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC217582	0.0	AC217582.2 Oryza punctata clone OP__Ba0071K23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628752.1	1e-174	B3 domain-containing protein Os03g0120900
Swissprot	Q8LMR9	1e-175	Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBL	A0A0E0K822	0.0	A0A0E0K822_ORYPU; Uncharacterized protein
STRING	OPUNC03G01540.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	2e-72	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]