PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G01290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 162aa MW: 17400.4 Da PI: 4.4253 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.6 | 2.7e-17 | 24 | 74 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+G+r + +g+Wv+eIr+p gk+ r++lg++ t+e+Aa+a++ a+++l+g+ OPUNC03G01290.1 24 PVYRGIRLR--SGKWVSEIREP---GKSSRIWLGTYQTPEMAAAAYDVAALALRGA 74 68****986..5*********8...557*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-10 | 24 | 73 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-27 | 25 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-27 | 25 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-18 | 25 | 81 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.941 | 25 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.45E-17 | 26 | 81 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MDQDESSGML PLTGRRVRAD TRHPVYRGIR LRSGKWVSEI REPGKSSRIW LGTYQTPEMA 60 AAAYDVAALA LRGADAALNF PGTATSRPAP ASSSPDDIAA GAGDQKRVVD EDDVFEMPRL 120 LVSMAEGLMM SPPRLSPVTD GVGGVSPEDD EDEDGMSLWN HS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-13 | 26 | 81 | 6 | 63 | ATERF1 |
3gcc_A | 2e-13 | 26 | 81 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC236527 | 1e-161 | AC236527.1 Oryza minuta clone OM__Ba0059E04, complete sequence. | |||
GenBank | AC236542 | 1e-161 | AC236542.1 Oryza minuta clone OM__Ba0185B12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880266.1 | 5e-86 | ethylene-responsive transcription factor ERF027 | ||||
Refseq | XP_025880267.1 | 5e-86 | ethylene-responsive transcription factor ERF027 | ||||
Swissprot | Q9SJR0 | 4e-37 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A0E0K7Y6 | 1e-112 | A0A0E0K7Y6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G01290.1 | 1e-113 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 2e-17 | C-repeat/DRE binding factor 1 |