PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G00940.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 668aa    MW: 71521.2 Da    PI: 6.6231
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G00940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.11e-2262119158
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenln 58 
                      rW++qe+laL+++r+em+ ++r+++lk+plWeevs+k++e g++rs+k+C+ek+en+ 
  OPUNC03G00940.1  62 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRKLAEMGYRRSAKKCREKFENVD 119
                      8*******************************************************86 PP
2trihelix109.71.8e-34366451187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r+eme+r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++ql+a
  OPUNC03G00940.1 366 RWPKAEVHALIQLRTEMETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 451
                      8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.003859121IPR001005SANT/Myb domain
PROSITE profilePS500906.85361119IPR017877Myb-like domain
CDDcd122032.87E-2461118No hitNo description
PfamPF138378.5E-1461119No hitNo description
PROSITE profilePS500907.213359423IPR017877Myb-like domain
SMARTSM007170.0037363425IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-4364422IPR009057Homeodomain-like
PfamPF138371.4E-23365452No hitNo description
CDDcd122031.86E-29366430No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MQQQPGMPPF SAAGGEGAPS PISSRPPPEQ AAEEQQLNGS SLEHDGLGGD EGDRGGSSAG  60
NRWPRQETLA LLKIRSEMDA AFREAALKGP LWEEVSRKLA EMGYRRSAKK CREKFENVDN  120
TPSGSAVCAR MSSKLKALVP FVMAMATVAE LAAGKTYTIR WAVSGNSASG VHEHELLVGE  180
TAEEGGKRKR RSGGGGGGGG KAMRMFEGLM RQVMERQEAM QQRLLEAIER RDQERMIREE  240
AWRRQEVARL AREQDALAQE RAIAASRDAA VISFIQRVTG QSIAVPPPPL QPTPVASAAP  300
PPQHQHHQQT PQPIQLQHHI MPMTPQPQPQ PQLQPQPQSK EANTVRAPPP EQHDTAASGG  360
GASSSRWPKA EVHALIQLRT EMETRYQDSG PKGPLWEDIS AGMRRLGYSR SSKRCKEKWE  420
NINKYFKKVK ESNKKRPEDS KTCPYYHQLD ALYRSKANAA ASPAPATTTV LAPVPLSQTP  480
PPHVDHGSSN GNGNGWASAN NGGGSSGGMQ TKASNGTATA GGGGFPVVSV AGDGGGGNGN  540
GVAATTDNKG SKQEPVAKET APEQRQPQPL AMNHNYGNDR MADDMDSDSM DDDDDDDEFD  600
DDEEDDDIGG GKMHVQYETS HFQRPQLQNQ NVVVGRPNAS GGGGPPTAPA GPPPPAATSG  660
TSFLACVQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2172020.0AC217202.1 Oryza punctata clone OP__Ba0068C08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628078.11e-179trihelix transcription factor GTL1
SwissprotQ391172e-70TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0E0K7T60.0A0A0E0K7T6_ORYPU; Uncharacterized protein
STRINGOPUNC03G00940.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-48Trihelix family protein