PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G00880.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1769aa    MW: 195054 Da    PI: 5.592
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G00880.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.7e-0617491769526
                       --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                       +C+ f+++G+C+ G++C++ H+
  OPUNC03G00880.3 1749 ICK-FHENGYCRKGASCNYLHP 1769
                       799.9999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.09E-886159IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.106.2E-9108166IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd155681.10E-19114159No hitNo description
SMARTSM002491.6E-6114160IPR001965Zinc finger, PHD-type
PROSITE patternPS013590115175IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001517.9E-5341427IPR019835SWIB domain
Gene3DG3DSA:1.10.245.101.4E-26346429IPR003121SWIB/MDM2 domain
SuperFamilySSF475921.11E-21346423IPR003121SWIB/MDM2 domain
PfamPF022011.1E-16349422IPR003121SWIB/MDM2 domain
SMARTSM007191.8E-46483592IPR004343Plus-3 domain
PROSITE profilePS5136032.714483615IPR004343Plus-3 domain
SuperFamilySSF1590422.09E-34483608IPR004343Plus-3 domain
PfamPF031266.0E-26488591IPR004343Plus-3 domain
SuperFamilySSF552772.88E-15743803IPR003169GYF domain
PROSITE profilePS5082914.508750802IPR003169GYF domain
SMARTSM004441.2E-13751804IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.2E-14752803IPR003169GYF domain
PfamPF022132.2E-9753792IPR003169GYF domain
PROSITE profilePS5010314.12617441769IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-517461768IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1769 aa     Download sequence    Send to blast
MEGAAAAAPA AGELLSPAEA DWPPELRLPP PPPAAASEGE PPPARAAMGM DDSQFLGSII  60
GLPAQPPQAT VEALTVVGVK RRRGRPPKKR DGAATAVIPA AKPARRREDE EEVVCFICFD  120
GGNLVVCDRR GCPKVYHPAC IKRDEAFFQS RSKWNCGWHI CSSCEKAVHY MCYTCTYSLC  180
KVCIKQGKFF SVRGTKGFCD TCYSTILLIE SKDEGDTKIV VDFDDQNSWE YLFKLYWLDL  240
KGKLSLTLEE LTSAKSRWNA PTTYTRKEKD ESSDDLYDAN NDDDAGSDCS SGKRKRNSST  300
KKGRKRWKPN SDCSIATKKV ETVTRDAGTL SNKVPTEEAS LPLDAKWASP ELLEFVGHMR  360
DGDQSFISQF DVQALLLDYI KQNNLRDPQR KSQIICDSRL HRLFRKTRVA HFEMLKLLEM  420
HFLVSEPSAV NDGSQGIINP NSAQIDHVSG YSDMAAKFSP DKRRRMHRKM EREPQANPED  480
YAAIDMHNIN LIYLRRSLME DLIDDPTFSE KISGAFVRIR ISGLGQKQDM YRLVKVVGTH  540
KVSEKYSVGK KMTHFALEIM NLNKKEIITM DTVSNQDFTE EECKRLRQSM KYDLISRLKV  600
GDIQEKAKIF QFIRVNDLLN TPEERARRIN EVLDVHVDSH MDPDYESDEE FGNKKAVERN  660
VNWARSDPFV SPIKVKYSNT SQKNGDATRH HKNLSKQNTE CKSEAARNFE NSHSSVGMDI  720
PKSGTNVKST MCETTSLSSS GVVSSDMEPE KVWHYKDPSG NIQGPFTLVQ LSKWTSYFPR  780
DMRVWLTFES EERSLLLTEV LSKQPKDFGQ PASVTTSSKS TLADTGQNRN TQIVDLNRAP  840
SPVGYSMLNS FETTVQSTKH SAPERESVNS LDDRLSHSTD SVPPKDTNAS NSQAMCQIKH  900
SGSLPSPGSP HQRSDLHHDE VQGGRSGEWN NQLNSELWSP SMPQTSSSAH SNVESHHDHY  960
PSWSQVQHDP KNSLQAGSGK DLNSRQDFLQ KLPSQRTTRD VPSPVFAWSP SESRTASSQH  1020
EGSCLSSTTN LCTHDELHSS IASAKAKSFA PATPVEDRGS SSPSGMLSHS ERAPICSPQS  1080
APSASDTCKM EEIMNQQKTL EADISNTSVN QSPQKILPES SPDNQDAEHE YRSPPPISES  1140
KALSPQSRTT PESSPDNQDT EREYPSPPPI SGSKEISPQS RTVPESSPDN QDIGHEYPSP  1200
PPIPESIELS PHSKVLPESS PDNQDIEPEC PSPPQIPESK ELSRQSKILL ESSPDNQDIK  1260
PVHPSPPQIP GSEELSRQSK ILPESSPDNQ DIKCEYSSPT PIPKSKELSL QSKILPESSS  1320
DNQDIKREDP SPIPVSKSKE LSPQSKILSE SYRDNQDVER EYPSSVLISE SKELAVDLPG  1380
SISLAPEKIV STDVGENSSL AFIFPKSPPA GDGALKSVSD IAKAHLEGED SNVKEELYVE  1440
STVVIRDDMV VNPVSGVESI DMSENLLESL MEQSCGTFYM DGTTTLEGFL SGSTKEEPQC  1500
SSPIALSTCS SPIALSPWGE HGYYQGDSVG SSLWGVQDDE PISNIWPLST QTPALQYSSG  1560
STAHFIDEVT VTHGNNGVVL STTPGEEVGL PNSGVCVDWG LVEQVNPEAN DASISMIDKN  1620
TGLEYSQPSA NDGSDVGTAR KTNHNTNLSL NHETAVPLSR SSGEASKKHG FITDLNVATS  1680
GKALGDTKNW NPSAGNANRG SQRNHHRDRY SQISESWLLS SNYSRSRSDG YGTGGSSRST  1740
PRGQTQRGIC KFHENGYCRK GASCNYLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2naa_A3e-13104181272Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2171980.0AC217198.1 Oryza punctata clone OP__Ba0023G04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630500.10.0zinc finger CCCH domain-containing protein 20 isoform X2
TrEMBLA0A0E0K7S80.0A0A0E0K7S8_ORYPU; Uncharacterized protein
STRINGOPUNC03G00880.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.11e-165DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding