PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G00610.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 305aa    MW: 34478.6 Da    PI: 5.7344
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G00610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.72.4e-49211481128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhP+deelv++yL++k + ++  + +++ evd++ +ePwdLp+ +k + +ewyfFs r++kyatg r+nra k+gyWkatgkdk++l+
  OPUNC03G00610.1  21 LPPGFRFHPSDEELVCYYLRNKQQLQTAAT-TMLVEVDLHACEPWDLPEVAKVGADEWYFFSLRERKYATGWRRNRASKQGYWKATGKDKAILQ 113
                      79*********************9999777.88***************88888999************************************99 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k +  g +ktLvfy+grap+g+kt Wvmhe+rl
  OPUNC03G00610.1 114 LdKPAMAGARKTLVFYSGRAPNGHKTAWVMHEFRL 148
                      7566779**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-5814175IPR003441NAC domain
PROSITE profilePS5100556.05621175IPR003441NAC domain
PfamPF023652.1E-2622148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDGLSDDNMM GGEMRAIESR LPPGFRFHPS DEELVCYYLR NKQQLQTAAT TMLVEVDLHA  60
CEPWDLPEVA KVGADEWYFF SLRERKYATG WRRNRASKQG YWKATGKDKA ILQLDKPAMA  120
GARKTLVFYS GRAPNGHKTA WVMHEFRLLH HPNPNIQKMQ QEGEDDWVLC RVFRKGNNNN  180
GQASQAVGIV NATSTTPRPS SSSSVPTTTA RHLHGLESLI SSPAPTIVSD QDRFSIQLHH  240
QHSEHFFLDE QQQEQLDLSV LQAPTSLEFE QAPGDGGMEI IAEMESFETT CAALQDASDY  300
YMQLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-471817712170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2328190.0AC232819.1 Oryza punctata clone OP__Ba0091D02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629924.11e-146NAC transcription factor 32
SwissprotQ84TE66e-60NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0E0K7N60.0A0A0E0K7N6_ORYPU; Uncharacterized protein
STRINGOPUNC03G00610.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169171212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-66NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]