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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OPUNC02G34240.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | G2-like | ||||||||
| Protein Properties | Length: 736aa MW: 81772 Da PI: 6.2513 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 77.8 | 1.4e-24 | 599 | 643 | 1 | 45 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45
kpr+rWtpeLHerFv+av++LGGsekAtPk++ ++mkv+gLt++h
OPUNC02G34240.2 599 KPRMRWTPELHERFVDAVNKLGGSEKATPKAVQKVMKVEGLTIYH 643
79*****************************************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF11107 | 1.4E-45 | 10 | 220 | No hit | No description |
| Pfam | PF11107 | 4.0E-16 | 228 | 353 | No hit | No description |
| SuperFamily | SSF46689 | 4.3E-10 | 596 | 643 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 7.4E-21 | 598 | 643 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 2.6E-16 | 599 | 642 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 3.0E-6 | 601 | 641 | IPR001005 | SANT/Myb domain |
| Pfam | PF14379 | 1.0E-17 | 665 | 707 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 736 aa Download sequence Send to blast |
MGWAHETVAM EELLGLVRGF VDVLVLAGGH TSSGAAATWR SGDVKKALQW ALFFEEVFKN 60 LRDNGQYDGS ARELDAALVQ LTSSPNFPKG IEDIRSKTLS TARYLVVKHF LKTTSVENLG 120 AVLQAVVEMD MDGISASSER NVCQEYVQSI LDTNLPSLMR TKNARDVGHS TSSDEFCEES 180 LFMGNSQILL KELQKNLDSG SCISLAEKGL STLLKSMKKN SFGGAGSTSC TPATAQKAQI 240 VDKFILWKQW RAKCLSYLLD ERTIRIMSGA NLIFNAPKEQ WMGLFEPLKD SSQSGIVEVM 300 ELCLLGLVAR QWNSLIESFM SHTFSSFPIS KQYADLHQLL QGTTQDECQD KLLGFKEMDI 360 CEYATQSLES EPYILWLLPP VLTAAAMPPR SSLFKKYLVE IDKQLSEAAS KDRPTSTMNQ 420 LRNGKVPRYL SPAITVVPAL SEVAFPSFSE HRPSYIEREQ CGSSINSFDA STPMMVYPKV 480 SEQNSWSQEP LPGPFVCPTS VDFFDQQDMA IFDQQIQDNI AASPSTNLAK QNEWFSSGTS 540 LQYLESSVSA GSVLKAVDAT STTPSNYPHC HAQRNTSNPP NFNELCSDNI ASSNIAPTKP 600 RMRWTPELHE RFVDAVNKLG GSEKATPKAV QKVMKVEGLT IYHKYRTVHH RPELSDGRGM 660 ETTCEGLRVQ IGLQKQLHEQ LEIQRKLQLQ VEEHSKYLAM IIAKQSESLR QLGALPRSLD 720 APTQCQKLQA EAVLNC |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 7e-21 | 599 | 651 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 7e-21 | 599 | 651 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 7e-21 | 599 | 651 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 7e-21 | 599 | 651 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 7e-21 | 599 | 651 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 7e-21 | 599 | 651 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 7e-21 | 599 | 651 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 7e-21 | 599 | 651 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK066382 | 0.0 | AK066382.1 Oryza sativa Japonica Group cDNA clone:J013064K05, full insert sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015627299.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
| Refseq | XP_015627301.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
| Refseq | XP_015627302.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
| Refseq | XP_025878774.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
| Refseq | XP_025878775.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
| TrEMBL | A0A0E0K6S9 | 0.0 | A0A0E0K6S9_ORYPU; Uncharacterized protein | ||||
| STRING | OMERI02G34190.3 | 0.0 | (Oryza meridionalis) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G28610.1 | 5e-38 | phosphate starvation response 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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