PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G33860.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 328aa    MW: 36117.5 Da    PI: 7.3832
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G33860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.21.4e-48101601128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..lelee...........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                      lppGfrF P+deelv++yL++kv +++                  ++ evd++++ePw+Lp  +k +++ewyfFs rd+kyatg r+nratksg
  OPUNC02G33860.1  10 LPPGFRFYPSDEELVCHYLHNKVVNQHrfA---GvgggaagggggTMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSG 100
                      79********************99999541...2346677778768***************87788999************************* PP

              NAM  82 yWkatgkdkevlsk.............kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      yWkatgkd+ +++              + + vg++ktLvfy+grap+g+kt+Wvmhe+r+
  OPUNC02G33860.1 101 YWKATGKDRVIHNPkltttmhaaaahrRASIVGMRKTLVFYRGRAPNGVKTNWVMHEFRM 160
                      ************9877666655555444444***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-577179IPR003441NAC domain
PROSITE profilePS5100554.18310179IPR003441NAC domain
PfamPF023651.2E-2711160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHN KVVNQHRFAG VGGGAAGGGG GTMVEVDLHT  60
HEPWELPDVA KLSTNEWYFF SFRDRKYATG LRTNRATKSG YWKATGKDRV IHNPKLTTTM  120
HAAAAHRRAS IVGMRKTLVF YRGRAPNGVK TNWVMHEFRM ENPHTPPKED WVLCRVFYKK  180
KAETETEYSM ENEQDAVIAM ARSAAVIKGG CYSNSSSSHD PAGHHSPPLF PASLAACSSS  240
HHYSQPPPPD HHHHMPINGG GSLNEFIPTT SMALYSSIYD FSQHLDGGSG VAASASAAGS  300
RVDGGGEQCG LMELGLEEHY NYNSLMPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-4511854170NO APICAL MERISTEM PROTEIN
1ut4_B3e-4511854170NO APICAL MERISTEM PROTEIN
1ut7_A3e-4511854170NO APICAL MERISTEM PROTEIN
1ut7_B3e-4511854170NO APICAL MERISTEM PROTEIN
3swm_A3e-4511857173NAC domain-containing protein 19
3swm_B3e-4511857173NAC domain-containing protein 19
3swm_C3e-4511857173NAC domain-containing protein 19
3swm_D3e-4511857173NAC domain-containing protein 19
3swp_A3e-4511857173NAC domain-containing protein 19
3swp_B3e-4511857173NAC domain-containing protein 19
3swp_C3e-4511857173NAC domain-containing protein 19
3swp_D3e-4511857173NAC domain-containing protein 19
4dul_A3e-4511854170NAC domain-containing protein 19
4dul_B3e-4511854170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0609760.0AK060976.1 Oryza sativa Japonica Group cDNA clone:006-202-E09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623778.10.0protein CUP-SHAPED COTYLEDON 1
SwissprotQ84TE66e-59NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0E0K6M50.0A0A0E0K6M5_ORYPU; Uncharacterized protein
STRINGOPUNC02G33860.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-76NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]