PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G33130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 106aa MW: 11650 Da PI: 6.791 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.1 | 5.9e-10 | 7 | 37 | 2 | 36 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkf 36 +y+GVr+++ +g+Wv+eIr+p +r++lg+ OPUNC02G33130.1 7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTE 37 69******9.**********8.....334****9984 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.70E-14 | 6 | 36 | No hit | No description |
Pfam | PF00847 | 3.0E-4 | 7 | 42 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-14 | 7 | 46 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-8 | 7 | 50 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.1E-8 | 7 | 62 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.246 | 7 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-6 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-6 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTEAGA TAAVATPASA ASAATPLGNA 60 AAAAADARTT TTTYGAEWSG RFLEEQHIEQ MIDELLDSNF SMEICY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003975 | 3e-62 | AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04. | |||
GenBank | AP014958 | 3e-62 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 3e-62 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797628.1 | 1e-37 | ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A0E0K6B6 | 6e-72 | A0A0E0K6B6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G33130.1 | 1e-72 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1418 | 35 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 9e-20 | ERF family protein |