PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G30720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 25722.7 Da    PI: 5.0694
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G30720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF862.2e-27959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krie+   rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl  ++s
  OPUNC02G30720.1  9 KRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFAS 59
                     79*********************************************9986 PP

2K-box56.71.1e-19901711899
            K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      + ++a L++++ +    +R++ Ge+Le Ls+ eLqqLe++Le +l ++  +K++ ++eqi+elq+k  +l een++Lr+++ 
  OPUNC02G30720.1  90 HSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVS 171
                      334555555555555889************************************************************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.455161IPR002100Transcription factor, MADS-box
CDDcd002655.81E-39275No hitNo description
PRINTSPR004041.9E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-30374IPR002100Transcription factor, MADS-box
PfamPF003191.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.08286176IPR002487Transcription factor, K-box
PfamPF014861.4E-1792170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MARERREIKR IESAAARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLSHFASS  60
SMDEIIDKYN THSNNLGKAE QPSLDLNLEH SKYAHLNEQL AEASLRLRQM RGEELEGLSI  120
DELQQLEKNL EAGLHRVMLT KDQQFMEQIS ELQRKSSQLA EENMQLRNQV SQISPAEKQV  180
VDTENFVTEE GQSSESVMTA LHSGSSQSQD NDDGSDVSLK LGLPCGAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-20173173MEF2C
5f28_B4e-20173173MEF2C
5f28_C4e-20173173MEF2C
5f28_D4e-20173173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8345170.0CT834517.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA022M02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624915.11e-164MADS-box transcription factor 22
SwissprotQ9XJ661e-165MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA0A0E0K5H71e-166A0A0E0K5H7_ORYPU; Uncharacterized protein
STRINGOPUNC02G30720.11e-167(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-76MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]