PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G30580.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 339aa    MW: 35826.5 Da    PI: 6.5104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G30580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.5e-14142193155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +rr+h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  OPUNC02G30580.1 142 QRRNHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVAGAINFVKELE 193
                      79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.65E-15140197No hitNo description
SuperFamilySSF474591.57E-17140212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.885141192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-11142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-14142207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-10147198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MALEAVVFPQ EHLSCAAAMY ATPPSLGCGV DMDEFEENGG VVLQEEAGAA VHGGGGDAGG  60
MMSVWVNAAT CARSIAASGA VEEFWDERQY PVSSPPAPSR TGASPVPTPA ASGGGGGHVK  120
AAARRRRRRP KLVKNKEEAE SQRRNHIAVE RNRRRQMNEY LAVLRSLMPP SYAQRGDQAS  180
IVAGAINFVK ELEQLLQSLE AQKRRAEHAP PAPPFAGFFT FPQYSTTVGD NAAGSGAADG  240
EGGCGARPGA ADVEVAIAES HANVRVLAPR RPRQLLRMVV ALQCLGLTVL HLNVTTTADH  300
LALYSFSLKM EDECRLSSVD EIAAAVNQMV ANIAGECIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128RRRRRR
2143153RNHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1078980.0AK107898.1 Oryza sativa Japonica Group cDNA clone:002-134-F05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623907.10.0transcription factor bHLH94
TrEMBLA0A0E0K5G20.0A0A0E0K5G2_ORYPU; Uncharacterized protein
STRINGOPUNC02G30580.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-54bHLH family protein