PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G30010.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 395aa    MW: 43239 Da    PI: 5.8122
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G30010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.91.9e-11212268155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s ++GV++++++g+++A+++d  ++  g +rk  + g+++t+e+Aa+ ++ a++k++g
  OPUNC02G30010.1 212 SSFHGVTRHRWSGKYEAHLWDsSCImEGrRRKGKQ-GSYDTEEKAARSYDVAALKYWG 268
                      5799*****************88889886667777.********************98 PP
2AP249.11.4e-15311362155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++ k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +++g
  OPUNC02G30010.1 311 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 362
                      57****************9995.....234************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.60E-16212278No hitNo description
SuperFamilySSF541711.44E-13212278IPR016177DNA-binding domain
SMARTSM003801.4E-19213282IPR001471AP2/ERF domain
PROSITE profilePS5103217.28213276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-12213277IPR001471AP2/ERF domain
PfamPF008475.8E-8213268IPR001471AP2/ERF domain
PRINTSPR003671.6E-5214225IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-17311372IPR016177DNA-binding domain
PfamPF008471.9E-9311362IPR001471AP2/ERF domain
CDDcd000188.72E-23311370No hitNo description
SMARTSM003804.1E-28312376IPR001471AP2/ERF domain
PROSITE profilePS5103218.571312370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-19312371IPR001471AP2/ERF domain
PRINTSPR003671.6E-5352372IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MRGKILIRRT DCIIWEAFGS LVPIDPFRPR EMESSLKEEK AAGELGDDEK AERSSPINLN  60
SLPATAAAAA AAPDEGGLHS AVESGAKDSS STKGVESLGT GHKKIPKSEV VDEDDVQTCA  120
EGTNDSVVPS NSKNPINEKD ATVNVAENGQ SADGIPEDQR VTILSVVKKD EPADDVRDSV  180
NPVTVVSYRD EKGGTSATAG TTAVRPAGTR SSSFHGVTRH RWSGKYEAHL WDSSCIMEGR  240
RRKGKQGSYD TEEKAARSYD VAALKYWGQN TKLNFSVSEY ERELEDIRDM SREECVTYLR  300
RRSSCFSRGA SIYRGVTRRQ KDGRWQARIG LVAGTRDIYL GTFKTEEEAA EAYDIAAIEI  360
RGKNAVTNFD RSNYMEKGMH CIEGAGLKLL ASKPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238245GRRRKGKQ
2299320RRRSSCFSRGASIYRGVTRRQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402200.0FJ940220.1 Oryza sativa Japonica Group clone KCS100F03 AP2D8 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626428.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
RefseqXP_015626429.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
RefseqXP_015626430.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
TrEMBLA0A0E0K5870.0A0A0E0K587_ORYPU; Uncharacterized protein
STRINGOPUNC02G30010.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.14e-67AP2 family protein