PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G29870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 200aa MW: 23316 Da PI: 9.7409 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83.4 | 2.1e-26 | 81 | 131 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k ++++ +s+yF +pik+AA+eL+v+lT+LKr+CR +GI+RWPhRk+ksl OPUNC02G29870.1 81 KKPLTFKLVSQYFCMPIKQAAQELNVGLTLLKRRCRVLGIPRWPHRKVKSL 131 6889*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.201 | 62 | 152 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.2E-22 | 84 | 131 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MYPPLSPYQW KSGAFTKRTS FSIGDELYTL FDGDILSIWG DVEEHHKSDK DSGEKEQRLE 60 REKAMELQVQ RLPSSRGSGE KKPLTFKLVS QYFCMPIKQA AQELNVGLTL LKRRCRVLGI 120 PRWPHRKVKS LETLIKNVQE LGMETGQDEN KIMNAVEMLQ QTKKLIEQSP DAKLDDWIKM 180 LRQACFKENY KRRRLLTIEG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 190 | 194 | KRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 2e-95 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627113.1 | 1e-107 | protein RKD1 | ||||
Refseq | XP_015627115.1 | 1e-107 | protein RKD1 | ||||
TrEMBL | A0A0E0K568 | 1e-146 | A0A0E0K568_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G29870.1 | 1e-147 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 3e-41 | RWP-RK domain-containing protein |