PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G29000.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 220aa MW: 24758 Da PI: 9.4728 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.5 | 8.2e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +++fsstg+lye+ss OPUNC02G29000.4 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 58.7 | 2.5e-20 | 78 | 167 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +++ ++e+a L+++++nLq+++++l+Ge+L+ L +++Lq Le++Le sl++iR +K l++++ el + + +++++ +L +kl+ OPUNC02G29000.4 78 GGNATSEIKREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKGSLIHQENVELSRSLNVMSQQKLELYNKLQ 167 55678899*****************************************************************99999999999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.17 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.9E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.63E-43 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 5.23E-32 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.7E-19 | 81 | 166 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.458 | 82 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLVVFSS TGRLYEFSST 60 NMKTVIDRYT NAKEELLGGN ATSEIKREAA SLRQQLHNLQ ESHKQLMGEE LSGLGVRDLQ 120 GLENRLEISL RNIRMRKGSL IHQENVELSR SLNVMSQQKL ELYNKLQACE QRGATDANES 180 SSTPYSFRII QNTNIPPSLE MSQSQQKEGE CNKTDAPELG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-21 | 1 | 74 | 1 | 74 | MEF2C |
5f28_B | 1e-21 | 1 | 74 | 1 | 74 | MEF2C |
5f28_C | 1e-21 | 1 | 74 | 1 | 74 | MEF2C |
5f28_D | 1e-21 | 1 | 74 | 1 | 74 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT835372 | 0.0 | CT835372.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI222G19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626794.1 | 1e-149 | MADS-box transcription factor 57 isoform X1 | ||||
Refseq | XP_015626795.1 | 1e-149 | MADS-box transcription factor 57 isoform X2 | ||||
Swissprot | Q6Z6W2 | 1e-150 | MAD57_ORYSJ; MADS-box transcription factor 57 | ||||
TrEMBL | A0A0E0K4V4 | 1e-159 | A0A0E0K4V4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G29000.1 | 1e-157 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 4e-77 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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