PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G28540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 282aa MW: 28972.4 Da PI: 8.9306 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.8 | 2.8e-39 | 42 | 101 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +a+kcprC+stntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+s OPUNC02G28540.1 42 PEAVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRSG 101 5789*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-33 | 34 | 99 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.2E-33 | 44 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.497 | 45 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 47 | 83 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MQEFQSIPGL AGRLFGGAAA ADIRRAQAQQ GPASRCGGIP SPEAVKCPRC ESTNTKFCYY 60 NNYNLSQPRH FCKSCRRYWT KGGVLRNVPV GGGCRKSKRS GSSSSASSAP STPTTAATDN 120 AKNQRRASAS SPRSSSGGSG NTSPTAAAAT TPTTPATPSS NNIAVINHAT TTNPFPTDVP 180 PPAPIFADQA AALASLFAPP PPPPLPVFSF TAQPKAEDGI ASVLLAGQTT PVVASTATAV 240 ADMTPFTSLD AGIFELGDVP PAAYWNAGSC WTDVPDPTVY LP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:11470159}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028132 | 0.0 | AB028132.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-8. | |||
GenBank | AK061000 | 0.0 | AK061000.1 Oryza sativa Japonica Group cDNA clone:006-203-F09, full insert sequence. | |||
GenBank | AK101321 | 0.0 | AK101321.1 Oryza sativa Japonica Group cDNA clone:J033034E07, full insert sequence. | |||
GenBank | AP005284 | 0.0 | AP005284.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1121A12. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006647826.1 | 1e-135 | PREDICTED: dof zinc finger protein DOF5.4-like | ||||
Refseq | XP_015623188.1 | 1e-135 | dof zinc finger protein 4 | ||||
Swissprot | Q6Z345 | 1e-136 | DOF4_ORYSJ; Dof zinc finger protein 4 | ||||
TrEMBL | A0A0E0K4Q2 | 0.0 | A0A0E0K4Q2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G28540.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6496 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 4e-34 | OBF binding protein 4 |
Publications ? help Back to Top | |||
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