PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G28370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CO-like | ||||||||
Protein Properties | Length: 407aa MW: 44229.1 Da PI: 4.6766 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.9 | 7.4e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++e++ +C+++ lC +C + H+ Ht++ OPUNC02G28370.1 4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45 7*****************************657888889876 PP | |||||||
2 | zf-B_box | 21.9 | 3.6e-07 | 47 | 89 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C+++ +++ C + + lC++C ++H g H++++ OPUNC02G28370.1 47 LCDRCVGQPAAVRCLEENASLCQNCDWNGH-GaassaagHKRQT 89 7*****************************.5588889998876 PP | |||||||
3 | CCT | 64.5 | 3.2e-22 | 350 | 393 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ OPUNC02G28370.1 350 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 393 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.1E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.983 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.82E-7 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.015 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.78E-6 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.24 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 7.0E-17 | 350 | 392 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.408 | 350 | 392 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MDALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CVGQPAAVRC 60 LEENASLCQN CDWNGHGAAS SAAGHKRQTI NCYSGCPSSA ELSRIWSFIM DIPTVAAEPN 120 CEEGINMMSI NDSDISNHCG APEDSSLLDI ASTALMSDLP TGDKFKPLIG SSSGDGMNLL 180 PLNADQTAEP VSTMPKAPCV TDKDMFNDGS VYEDFCVDDA DLTFENYEEL FGTSHIQTEQ 240 LFDDAGIDSY FEMKEVPADE SNEQPKPVQP ECSNVASVDS GMTNPAARAD SSHCIPGRQA 300 ISNISLSFSG LTGESSAGDF QDCGVSSMIL MGEPPWHPPG PESSSAGGSR DNALTRYKEK 360 KKRRKFDKKI RYASRKARAD VRKRVKGRFV KAGEAYDYDP LSQTRSY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 359 | 363 | KKKRR |
2 | 359 | 364 | KKKRRK |
3 | 360 | 364 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB001888 | 0.0 | AB001888.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:S3574. | |||
GenBank | AK071630 | 0.0 | AK071630.1 Oryza sativa Japonica Group cDNA clone:J023105D03, full insert sequence. | |||
GenBank | CT832279 | 0.0 | CT832279.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228H16, full insert sequence. | |||
GenBank | CT832280 | 0.0 | CT832280.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228J16, full insert sequence. | |||
GenBank | CT832282 | 0.0 | CT832282.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209I20, full insert sequence. | |||
GenBank | EU605849 | 0.0 | EU605849.1 Oryza sativa Indica Group isolate Ba8 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878658.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 isoform X3 | ||||
Swissprot | Q9SSE5 | 1e-127 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A0E0K4N3 | 0.0 | A0A0E0K4N3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G28370.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 4e-95 | B-box type zinc finger protein with CCT domain |