PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G25920.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 491aa    MW: 51833.5 Da    PI: 7.0317
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G25920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-1661105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT eE+ ++++a +++G   W++I +++g ++t+ q++s+ qk+
  OPUNC02G25920.1  61 REKWTDEEHRRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 105
                      789*****************88.*********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-1655109IPR009057Homeodomain-like
PROSITE profilePS5129420.84756110IPR017930Myb domain
TIGRFAMsTIGR015579.0E-1659108IPR006447Myb domain, plants
SMARTSM007177.4E-1360108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-961101IPR009057Homeodomain-like
PfamPF002497.6E-1461104IPR001005SANT/Myb domain
CDDcd001677.61E-1063106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MEMACLQGNA MATDENGADD RPGGESTVDH LRSHLNYGDM DLSGEEHVPK ARKPYTITKQ  60
REKWTDEEHR RFLEALQLHG RAWRRIQEHI GTKTAVQIRS HAQKFFSKVV RESSGSNTGS  120
GGASAAAAAA AAIQIPPPRP KRKPAHPYPR KVDGAAKKHV PALRQLEKPL LRMQSLSEQE  180
DGSPTSVLTA AQIGTEALGG GFSNNSSGSG SLAPSAAGSD EHVHGGGSPA SSVDRQDGYL  240
SPSIPTAELA MQAPNTKIIA TTDAKEASSE ASVFRLFGKS VVVKDSDQLH LLSGSNIATS  300
ASVERATRNI LVPSFAAAEG SSSNPWPSSM QQFLYFLPRS DGFTGQPVMP WFSYNGSLPC  360
ALFYPAAAAA NHQQCHRDSE GVEFRASQRE GSLTGSNTAS SVVLGSSAAV AAAAQNSDVA  420
ESRGLGNSRD SDAAAAASPR LTKCESSASV TLMQRGFMPY KRCAAESELL RSEAAGGEEA  480
VADGELTRLC L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117260.0AK111726.1 Oryza sativa Japonica Group cDNA clone:J023036F23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623484.10.0protein REVEILLE 1 isoform X2
TrEMBLA0A0E0K3Q30.0A0A0E0K3Q3_ORYPU; Uncharacterized protein
STRINGOPUNC02G25920.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-36MYB_related family protein