PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G25920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 491aa MW: 51833.5 Da PI: 7.0317 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.1e-16 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE+ ++++a +++G W++I +++g ++t+ q++s+ qk+ OPUNC02G25920.1 61 REKWTDEEHRRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 105 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-16 | 55 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.847 | 56 | 110 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 9.0E-16 | 59 | 108 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.4E-13 | 60 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-9 | 61 | 101 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.6E-14 | 61 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.61E-10 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MEMACLQGNA MATDENGADD RPGGESTVDH LRSHLNYGDM DLSGEEHVPK ARKPYTITKQ 60 REKWTDEEHR RFLEALQLHG RAWRRIQEHI GTKTAVQIRS HAQKFFSKVV RESSGSNTGS 120 GGASAAAAAA AAIQIPPPRP KRKPAHPYPR KVDGAAKKHV PALRQLEKPL LRMQSLSEQE 180 DGSPTSVLTA AQIGTEALGG GFSNNSSGSG SLAPSAAGSD EHVHGGGSPA SSVDRQDGYL 240 SPSIPTAELA MQAPNTKIIA TTDAKEASSE ASVFRLFGKS VVVKDSDQLH LLSGSNIATS 300 ASVERATRNI LVPSFAAAEG SSSNPWPSSM QQFLYFLPRS DGFTGQPVMP WFSYNGSLPC 360 ALFYPAAAAA NHQQCHRDSE GVEFRASQRE GSLTGSNTAS SVVLGSSAAV AAAAQNSDVA 420 ESRGLGNSRD SDAAAAASPR LTKCESSASV TLMQRGFMPY KRCAAESELL RSEAAGGEEA 480 VADGELTRLC L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111726 | 0.0 | AK111726.1 Oryza sativa Japonica Group cDNA clone:J023036F23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623484.1 | 0.0 | protein REVEILLE 1 isoform X2 | ||||
TrEMBL | A0A0E0K3Q3 | 0.0 | A0A0E0K3Q3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G25920.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 2e-36 | MYB_related family protein |