PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G25780.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 413aa    MW: 44057.9 Da    PI: 7.5964
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G25780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.63.2e-3097187186
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                      f+kv tpsdv+k++rlv+pk++ae++       +e++  l +ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g
  OPUNC02G25780.1  97 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldAAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGvG 187
                      89***************************955556888************************************************95423 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-4191204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-2994201IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-2595184No hitNo description
PROSITE profilePS5086314.7297201IPR003340B3 DNA binding domain
SMARTSM010193.4E-2297203IPR003340B3 DNA binding domain
PfamPF023621.4E-2797189IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MEFTTSSRFS KEEEDEEQDE AGRREIPFMT ATAEAAPAPT SSSSSPAHHA ASASASASVS  60
ASGSSTPFRS DDGAGASGSG GGGGGGEAEV VEKEHMFDKV VTPSDVGKLN RLVIPKQYAE  120
KYFPLDAAAN EKGLLLNFED RAGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV  180
SFSRGVGDEA ARHRLFIDWK RRADTRDTLR LPRGLPLPMP LTSHYAPWGL GGGGGFFVPP  240
SPPATLYEHR LRQGLDFRAF NPAAPMGRQV LLFGSARIPP QAPLLARAAP SPLHHHYTLQ  300
PSGDGVRAEG SSVVLDSVPV IESPTTAAKR VRLFGVNLDN PHGGGGAAAA AGESSNHGNA  360
LSLQTPAWMR RDPTLRLLEL PPHHHGAESS AASSPSSSSS SKRDAHSALD LDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-62902021113B3 domain-containing transcription factor NGA1
5os9_B6e-62902021113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankKJ8320750.0KJ832075.1 Oryza sativa Indica Group cultivar Nagina 22 B3 transcription factor ngatha 3 (NGA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624169.10.0B3 domain-containing protein Os02g0683500
SwissprotQ6EU300.0Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A0E0K3N80.0A0A0E0K3N8_ORYPU; Uncharacterized protein
STRINGOPUNC02G25780.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.15e-62B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]