PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G25290.3

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 382aa MW: 38608.9 Da PI: 8.7354

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G25290.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	78	139	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss OPUNC02G25290.3 78 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 139 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	74	136	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-33	80	136	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MDAAHWHQGL GLVKPMEDML MGANPNPNGS SNPPPPPPSS AASAQRPIAP PAAGATGGAG 60 AAGAVAGAST ERRARPQKEK ALNCPRCNST NTKFCYYNNY SLQQPRYFCK TCRRYWTEGG 120 SLRNVPVGGG SRKNKRSSSS VVSSAAASAS TSAAVSGSVP VGLAAKNPKL MHEGAQDLNL 180 AFPHHHGRAL QPPEFTAFPS LESSSVCNPG GNLAAANGAG GRGGVGAFSA MELLRSTGCY 240 VPLPQMAPLG MPAEYAAAGF HLGEFRMPPP PQQQQQQAQT VLGFSLDTHG TGAGGGSGVF 300 GACSAGLQES AAGRLLFPFE DLKPVVSAAA GDANSGGDHQ YDHGKNQGGG GGVIGGHETP 360 GFWNSSMIGN GSSNGGGGGG SW

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MDAAHWHQGL GLVKPMEDML MGANPNPNGS SNPPPPPPSS AASAQRPIAP PAAGATGGAG  60
AAGAVAGAST ERRARPQKEK ALNCPRCNST NTKFCYYNNY SLQQPRYFCK TCRRYWTEGG  120
SLRNVPVGGG SRKNKRSSSS VVSSAAASAS TSAAVSGSVP VGLAAKNPKL MHEGAQDLNL  180
AFPHHHGRAL QPPEFTAFPS LESSSVCNPG GNLAAANGAG GRGGVGAFSA MELLRSTGCY  240
VPLPQMAPLG MPAEYAAAGF HLGEFRMPPP PQQQQQQAQT VLGFSLDTHG TGAGGGSGVF  300
GACSAGLQES AAGRLLFPFE DLKPVVSAAA GDANSGGDHQ YDHGKNQGGG GGVIGGHETP  360
GFWNSSMIGN GSSNGGGGGG SW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK287447	0.0	AK287447.1 Oryza sativa Japonica Group cDNA, clone: J043016O04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627550.1	1e-176	dof zinc finger protein 2 isoform X1
Swissprot	B9F1L8	1e-177	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A0E0K3I5	0.0	A0A0E0K3I5_ORYPU; Uncharacterized protein
STRING	OPUNC02G25290.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-43	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]