PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G25290.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 387aa MW: 39083.5 Da PI: 9.2645

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G25290.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	83	144	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss OPUNC02G25290.2 83 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 144 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	79	141	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-33	85	141	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	87	141	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	89	125	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MSTIKISHRG PGWGLGLVKP MEDMLMGANP NPNGSSNPPP PPPSSAASAQ RPIAPPAAGA 60 TGGAGAAGAV AGASTERRAR PQKEKALNCP RCNSTNTKFC YYNNYSLQQP RYFCKTCRRY 120 WTEGGSLRNV PVGGGSRKNK RSSSSVVSSA AASASTSAAV SGSVPVGLAA KNPKLMHEGA 180 QDLNLAFPHH HGRALQPPEF TAFPSLESSS VCNPGGNLAA ANGAGGRGGV GAFSAMELLR 240 STGCYVPLPQ MAPLGMPAEY AAAGFHLGEF RMPPPPQQQQ QQAQTVLGFS LDTHGTGAGG 300 GSGVFGACSA GLQESAAGRL LFPFEDLKPV VSAAAGDANS GGDHQYDHGK NQGGGGGVIG 360 GHETPGFWNS SMIGNGSSNG GGGGGSW

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MSTIKISHRG PGWGLGLVKP MEDMLMGANP NPNGSSNPPP PPPSSAASAQ RPIAPPAAGA  60
TGGAGAAGAV AGASTERRAR PQKEKALNCP RCNSTNTKFC YYNNYSLQQP RYFCKTCRRY  120
WTEGGSLRNV PVGGGSRKNK RSSSSVVSSA AASASTSAAV SGSVPVGLAA KNPKLMHEGA  180
QDLNLAFPHH HGRALQPPEF TAFPSLESSS VCNPGGNLAA ANGAGGRGGV GAFSAMELLR  240
STGCYVPLPQ MAPLGMPAEY AAAGFHLGEF RMPPPPQQQQ QQAQTVLGFS LDTHGTGAGG  300
GSGVFGACSA GLQESAAGRL LFPFEDLKPV VSAAAGDANS GGDHQYDHGK NQGGGGGVIG  360
GHETPGFWNS SMIGNGSSNG GGGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028130	0.0	AB028130.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627550.1	1e-169	dof zinc finger protein 2 isoform X1
Swissprot	B9F1L8	1e-170	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A0E0K3I4	0.0	A0A0E0K3I4_ORYPU; Uncharacterized protein
STRING	OPUNC02G25290.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-43	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]