PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G25290.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 400aa MW: 40518.1 Da PI: 9.4056

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G25290.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	96	157	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss OPUNC02G25290.1 96 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 157 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	92	154	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-33	98	154	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	100	154	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	102	138	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MSWRMISSSS STATPQTQPY KSTNKVGLGL VKPMEDMLMG ANPNPNGSSN PPPPPPSSAA 60 SAQRPIAPPA AGATGGAGAA GAVAGASTER RARPQKEKAL NCPRCNSTNT KFCYYNNYSL 120 QQPRYFCKTC RRYWTEGGSL RNVPVGGGSR KNKRSSSSVV SSAAASASTS AAVSGSVPVG 180 LAAKNPKLMH EGAQDLNLAF PHHHGRALQP PEFTAFPSLE SSSVCNPGGN LAAANGAGGR 240 GGVGAFSAME LLRSTGCYVP LPQMAPLGMP AEYAAAGFHL GEFRMPPPPQ QQQQQAQTVL 300 GFSLDTHGTG AGGGSGVFGA CSAGLQESAA GRLLFPFEDL KPVVSAAAGD ANSGGDHQYD 360 HGKNQGGGGG VIGGHETPGF WNSSMIGNGS SNGGGGGGSW

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MSWRMISSSS STATPQTQPY KSTNKVGLGL VKPMEDMLMG ANPNPNGSSN PPPPPPSSAA  60
SAQRPIAPPA AGATGGAGAA GAVAGASTER RARPQKEKAL NCPRCNSTNT KFCYYNNYSL  120
QQPRYFCKTC RRYWTEGGSL RNVPVGGGSR KNKRSSSSVV SSAAASASTS AAVSGSVPVG  180
LAAKNPKLMH EGAQDLNLAF PHHHGRALQP PEFTAFPSLE SSSVCNPGGN LAAANGAGGR  240
GGVGAFSAME LLRSTGCYVP LPQMAPLGMP AEYAAAGFHL GEFRMPPPPQ QQQQQAQTVL  300
GFSLDTHGTG AGGGSGVFGA CSAGLQESAA GRLLFPFEDL KPVVSAAAGD ANSGGDHQYD  360
HGKNQGGGGG VIGGHETPGF WNSSMIGNGS SNGGGGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028130	0.0	AB028130.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-9.
GenBank	AK287447	0.0	AK287447.1 Oryza sativa Japonica Group cDNA, clone: J043016O04, full insert sequence.
GenBank	AP005885	0.0	AP005885.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0657H12.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627550.1	1e-169	dof zinc finger protein 2 isoform X1
Swissprot	B9F1L8	1e-170	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A0E0K3I3	0.0	A0A0E0K3I3_ORYPU; Uncharacterized protein
STRING	OPUNC02G25290.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	9e-44	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]