PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G24330.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 341aa MW: 35275.2 Da PI: 5.8392

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G24330.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.4e-05	5	26	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C ++F ++ L H+r+H OPUNC02G24330.1 5 TCKLCYRRFASPRALAGHMRSH 26 6********************9 PP
2	zf-C2H2	11.4	0.00099	196	218	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F++ L H +H OPUNC02G24330.1 196 FQCPACKKVFRSYQALGGHRASH 218 89**********99999998887 PP
3	zf-C2H2	10.9	0.0014	262	284	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F + L H ++H OPUNC02G24330.1 262 HECPYCYRVFASGQALGGHKKSH 284 79************999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.058	4	26	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.182	4	27	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.2E-4	6	26	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
Pfam	PF13912	8.6E-11	195	218	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.026	196	218	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.286	196	218	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.07E-7	196	218	No hit	No description
PROSITE pattern	PS00028	0	198	218	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.07E-7	257	284	No hit	No description
Pfam	PF13912	9.9E-12	262	284	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.39	262	284	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.912	262	284	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	264	284	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MAKNTCKLCY RRFASPRALA GHMRSHSVAA ANAAAAAAAA AAAAAAKLQI SSASSASTSF 60 TAADEEEEEE EEDVGFKKPL SIYALRENPK RSLRVSEYSF SDRESEAEST PTPAAKGARA 120 GGGGDGEPMS SLSYAGTPEE EVALALMMLS RDTWPSVERG GGGGEYSDDG SDDGYALPPP 180 SPAPAPAPVP EKRTRFQCPA CKKVFRSYQA LGGHRASHVR GGRGGCCAPP VAPPPQPQPQ 240 PQPPLPERDA GDEDMDGKAP PHECPYCYRV FASGQALGGH KKSHVCSAAA AAAHAQTPGG 300 GAPPPQPKIL GMIDLNFAPP VDEVELSAVS DPHFPSNPPG P

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005072	0.0	AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624884.1	1e-158	zinc finger protein ZAT1
TrEMBL	A0A0E0K369	0.0	A0A0E0K369_ORYPU; Uncharacterized protein
STRING	OPUNC02G24330.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3518	33	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	3e-22	C2H2-like zinc finger protein