PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G22610.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 691aa    MW: 74767.5 Da    PI: 7.0965
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G22610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.3e-23120221199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g  W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + 
  OPUNC02G22610.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RG 209
                      89*****************************96555555..8************************************************..34 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+++r+
  OPUNC02G22610.1 210 DGGDLHVGIRRA 221
                      88999*****97 PP
2Auxin_resp118.26.8e-39271354183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa+ as +++FevvY+Prast+eF+v+++ v++a++v++++GmRfkmafetedss++++ +Gtv+gv+ +dp+rWp+S+Wr+L+
  OPUNC02G22610.1 271 AARLASGGQPFEVVYYPRASTPEFCVRAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQVADPIRWPQSPWRLLQ 354
                      6788999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-37113223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.89E-29116222IPR015300DNA-binding pseudobarrel domain
CDDcd100175.66E-22119220No hitNo description
PROSITE profilePS5086312.689120222IPR003340B3 DNA binding domain
PfamPF023621.8E-21120221IPR003340B3 DNA binding domain
SMARTSM010192.7E-20120222IPR003340B3 DNA binding domain
PfamPF065072.2E-33271354IPR010525Auxin response factor
PROSITE profilePS5174516.06605685IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MITFADLAEP APGAERCVDR QLWLACAGGM CTVPPVGTTV YYFPQGHAEH ALGLAAPELS  60
AARVPALVPC RVAGVRYMAD PDTDEVFARI RLVPLRAAED GDVEDDGAAA GEEHEKPASF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YAADPPVQTV VAKDVHGVAW NFRHIYRGTP  180
RRHLLTTGWS TFVNQKKLVA GDSIVFLRGD GGDLHVGIRR AKRGFCGGGG GAEEASLPGW  240
DQYGGLMRGN ASPCAVAKGR GKVRAEDVVE AARLASGGQP FEVVYYPRAS TPEFCVRAAA  300
VRAAMRVQWC PGMRFKMAFE TEDSSRISWF MGTVAGVQVA DPIRWPQSPW RLLQVTWDEP  360
DLLQNVKRVS PWLVELVSSM PAIHLSSFSP PRKKPRIPAY PEFPFEGQLL NPAFPPNPLA  420
HGHHPHHHYH HNHPSFFPFP DVSAPAGIQG ARHAQFCPSL SDLHLTHLQS SLMYPGLRRP  480
DHVGPTPIPP PRISTDLTMG SSPPARALSM GAKKPDDAKP PGLMLFGQRI LTERQMSLSG  540
SAGGTTSPAA TGNSSLNWNT EKGGANASEG SGSGVIQNSP TDNTSSERLQ WFRENSTVSE  600
LGLEPGQCKV FIESDTVGRN LDLSSLSSFE QLYARLSEMF CIDSAELRSR VLYRGATGEV  660
KHAGDEPFSE FIKLARRLTI LTDAGSDNLG S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-811837551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432300.0AK243230.1 Oryza sativa Japonica Group cDNA, clone: J100044L04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622752.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A0E0K2M20.0A0A0E0K2M2_ORYPU; Auxin response factor
STRINGOPUNC02G22610.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16