PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G19580.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 377aa MW: 41017.7 Da PI: 8.1596

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G19580.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.8	1e-53	37	162	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL +k+++ + + +++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e+++ OPUNC02G19580.1 37 LPPGFRFHPTDEELITHYLLRKATDPGFAA-RAVGEADLNKCEPWDLPSRATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDREIFR 129 79***********************999.88***********988899************************************ PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grap+g kt Wvmheyr+ OPUNC02G19580.1 130 -GKALVGMKKTLVFYTGRAPRGGKTGWVMHEYRI 162 .99***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-66	23	185	IPR003441	NAC domain
PROSITE profile	PS51005	59.207	37	185	IPR003441	NAC domain
Pfam	PF02365	2.9E-29	38	162	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MRLARQQQQQ QVVAATMEHD VHHHRQMMQQ QQQDMDLPPG FRFHPTDEEL ITHYLLRKAT 60 DPGFAARAVG EADLNKCEPW DLPSRATMGE KEWYFFCVKD RKYPTGLRTN RATESGYWKA 120 TGKDREIFRG KALVGMKKTL VFYTGRAPRG GKTGWVMHEY RIHGKHAAAA AKSKEEWVLC 180 RVFKKSLEPA LAPAAGRRGA GTAVADVRPS SVSSMPMADD VVGLAPCALP PLMDVSGGGT 240 SLSATASPPL PGPPAHVTCF SNALEGQFLD APYLLPAADP AMAMALGAVA ADHLAMSPAA 300 SPFLETLQMQ YGQDATGGAG MVHELLMGGG WYCNKGKRER LSGASQDTGL TSEVNPGEIS 360 SSRQQRMDHH DASLWAY

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MRLARQQQQQ QVVAATMEHD VHHHRQMMQQ QQQDMDLPPG FRFHPTDEEL ITHYLLRKAT  60
DPGFAARAVG EADLNKCEPW DLPSRATMGE KEWYFFCVKD RKYPTGLRTN RATESGYWKA  120
TGKDREIFRG KALVGMKKTL VFYTGRAPRG GKTGWVMHEY RIHGKHAAAA AKSKEEWVLC  180
RVFKKSLEPA LAPAAGRRGA GTAVADVRPS SVSSMPMADD VVGLAPCALP PLMDVSGGGT  240
SLSATASPPL PGPPAHVTCF SNALEGQFLD APYLLPAADP AMAMALGAVA ADHLAMSPAA  300
SPFLETLQMQ YGQDATGGAG MVHELLMGGG WYCNKGKRER LSGASQDTGL TSEVNPGEIS  360
SSRQQRMDHH DASLWAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-55	35	185	18	168	NAC domain-containing protein 19
3swm_B	2e-55	35	185	18	168	NAC domain-containing protein 19
3swm_C	2e-55	35	185	18	168	NAC domain-containing protein 19
3swm_D	2e-55	35	185	18	168	NAC domain-containing protein 19
3swp_A	2e-55	35	185	18	168	NAC domain-containing protein 19
3swp_B	2e-55	35	185	18	168	NAC domain-containing protein 19
3swp_C	2e-55	35	185	18	168	NAC domain-containing protein 19
3swp_D	2e-55	35	185	18	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028180	0.0	AB028180.1 Oryza sativa mRNA for OsNAC1 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623389.1	0.0	NAC domain-containing protein 92 isoform X1
Swissprot	Q9FLJ2	7e-90	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0E0K1J2	0.0	A0A0E0K1J2_ORYPU; Uncharacterized protein
STRING	OPUNC02G19580.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39610.1	3e-82	NAC domain containing protein 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]