PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G18090.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 726aa MW: 76401.2 Da PI: 10.0561

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G18090.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.8	5.1e-08	223	267	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 ++W+ eEd l +v+++G g+W I ++ +Rt q++ rw OPUNC02G18090.1 223 KPWSREEDVELGAGVQKHGEGNWMEILHKYKfdSTRTHLQLQQRW 267 68******************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-11	217	274	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.396	217	275	IPR017930	Myb domain
SMART	SM00717	2.9E-6	221	273	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-6	223	267	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.39E-12	224	281	IPR009057	Homeodomain-like
CDD	cd11660	5.06E-17	225	272	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence Send to blast
MKKEFPGQAP TSQSHSEMDA AAAAAGGSAA KRKRSFSEDD AYLILHRYQP ATILTMLQEM 60 GKQVGAGKGI DWRALVRKTS TGITSAREYQ MLWRHLAYGH EFVESVEPAA LPLDDGSDLE 120 CEIEIVPAPG NEALAEATSF AKTIITGSSR EQASGQRVNS EAAALNTPNE KIVRVPSDKQ 180 LVPGYRLTNG TGLVSSSKQP SHAGSSPDPL DPNGHPKKKK KPKPWSREED VELGAGVQKH 240 GEGNWMEILH KYKFDSTRTH LQLQQRWALI CKRQGSTKPA NPKIPNATMS EELKAAQKAF 300 SLAIGTTRSS TLRPGGVPHH NPMVTTTTPE VKSVTAPSPL PVPVHVVPVP VPVQPVQVQL 360 PPPQLHQAPA QSAPPPPKVS NASNKSRNNS KKQVAQSIPV NGPLSIQEAA LAAGGRIAEP 420 SVATNFLKAA QSTKAVHIRS RGTVSSKSST GSKTPTVASE PGTQLGSDQH LELQSTGGPS 480 PVLTAHATEQ VHNVSEVAGV NPLGQSAGMH LSETKKTVNT APLSGSSDKM EIDDNSNYFA 540 VTMEDLFPED VKQEDVQDPK IEEAIDPKDA DMLEFDRFVA QGCLNKDNVD KSKAAKIAPE 600 AQGVVGSQKK QLKTLPTVGK SNPIFAGPPA TAKKTKAPVP QGGMSSGMVG AGSVGVLNRS 660 LGGKAPAPAT AGTQSTVQKQ QSMSSKGNLL VPKNVAPGTV TPANNRANTA ANGASKVNPP 720 ASQKPA

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence Send to blast

MKKEFPGQAP TSQSHSEMDA AAAAAGGSAA KRKRSFSEDD AYLILHRYQP ATILTMLQEM  60
GKQVGAGKGI DWRALVRKTS TGITSAREYQ MLWRHLAYGH EFVESVEPAA LPLDDGSDLE  120
CEIEIVPAPG NEALAEATSF AKTIITGSSR EQASGQRVNS EAAALNTPNE KIVRVPSDKQ  180
LVPGYRLTNG TGLVSSSKQP SHAGSSPDPL DPNGHPKKKK KPKPWSREED VELGAGVQKH  240
GEGNWMEILH KYKFDSTRTH LQLQQRWALI CKRQGSTKPA NPKIPNATMS EELKAAQKAF  300
SLAIGTTRSS TLRPGGVPHH NPMVTTTTPE VKSVTAPSPL PVPVHVVPVP VPVQPVQVQL  360
PPPQLHQAPA QSAPPPPKVS NASNKSRNNS KKQVAQSIPV NGPLSIQEAA LAAGGRIAEP  420
SVATNFLKAA QSTKAVHIRS RGTVSSKSST GSKTPTVASE PGTQLGSDQH LELQSTGGPS  480
PVLTAHATEQ VHNVSEVAGV NPLGQSAGMH LSETKKTVNT APLSGSSDKM EIDDNSNYFA  540
VTMEDLFPED VKQEDVQDPK IEEAIDPKDA DMLEFDRFVA QGCLNKDNVD KSKAAKIAPE  600
AQGVVGSQKK QLKTLPTVGK SNPIFAGPPA TAKKTKAPVP QGGMSSGMVG AGSVGVLNRS  660
LGGKAPAPAT AGTQSTVQKQ QSMSSKGNLL VPKNVAPGTV TPANNRANTA ANGASKVNPP  720
ASQKPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	221	PKKKKKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068448	0.0	AK068448.1 Oryza sativa Japonica Group cDNA clone:J013152C15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627404.1	0.0	uncharacterized protein LOC4329631
TrEMBL	A0A0E0K0Z4	0.0	A0A0E0K0Z4_ORYPU; Uncharacterized protein
STRING	OPUNC02G18090.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4684	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	2e-37	MYB_related family protein