PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G16040.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 293aa    MW: 30745 Da    PI: 7.1824
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G16040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.7e-13192235447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT+eE+ ++++++  +G+g Wkt ar + k+++  q+ s++qk+
  OPUNC02G16040.1 192 WTKEEHSQFLHGIGTYGKGKWKTLARDFVKTKSSTQIASHYQKF 235
                      ******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.32575IPR001005SANT/Myb domain
SuperFamilySSF466892.92E-52774IPR009057Homeodomain-like
PROSITE profilePS500904.6932769IPR017877Myb-like domain
PROSITE profilePS5129412.528184240IPR017930Myb domain
SuperFamilySSF466894.38E-14185241IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-10187237IPR006447Myb domain, plants
SMARTSM007174.3E-7188238IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-9191235IPR009057Homeodomain-like
CDDcd001672.35E-7192235No hitNo description
PfamPF002495.9E-9192234IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MHTDATATGN GGAATPGPAA AEPPAPSAWT RRDEKLLEML LWLWQLNPPW DRVAAELGDK  60
TATQAFGRYV CLSDELRLVM EAPAVQTPLA WDMHEQEAAM AVPPPGLEAE AAAGGGEVAG  120
MTAAVVVAGQ AADVAEPTGG ESAEVTAIVT SPHAATRAPT IGGGVELKSR ELKIPRKARM  180
TGGGPRKKAE MWTKEEHSQF LHGIGTYGKG KWKTLARDFV KTKSSTQIAS HYQKFCIRVE  240
KRRLSKCKRA SIHDIVSPTA PAPATATAPE SAAGPSAPCT LIESGLLIAG DDA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048612e-81AP004861.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0001A11.
GenBankAP0149582e-81AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624449.11e-111transcription factor SRM1
TrEMBLA0A0E0K0850.0A0A0E0K085_ORYPU; Uncharacterized protein
STRINGOPUNC02G16040.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144181825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-18MYB family protein