PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G13900.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 255aa    MW: 28193.6 Da    PI: 8.5862
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G13900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3491.1e-1529125190
                      EEEE-..-HHHHT.T-EE--HHH.HTT.....---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.....ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f kvl+psdv+    +lv+p++++ +      ++ + + + +++ed    g+ W +++  +k+++ + ltkGW  +v+++gL++gD+v F ++ 
  OPUNC02G13900.1  29 FGKVLMPSDVFWVtEQLVIPNEHVGKLldmvvMNREGGFFVVVVEDgaVAGKLWLFRY--WKRDNVHCLTKGWGCYVREKGLRAGDTVSFFHST 120
                      6799******975589********888888876666677777777766667*******..******************************9877 PP

                      S.SEE CS
               B3  87 r.sef 90 
                      + s+f
  OPUNC02G13900.1 121 TcSRF 125
                      64444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-1724134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-1627132IPR015300DNA-binding pseudobarrel domain
CDDcd100172.55E-1828131No hitNo description
PfamPF023624.8E-1229127IPR003340B3 DNA binding domain
SMARTSM010190.007929132IPR003340B3 DNA binding domain
PROSITE profilePS508639.10770133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAASPPLPTS IDGAQVLDDM EILKMKYLFG KVLMPSDVFW VTEQLVIPNE HVGKLLDMVV  60
MNREGGFFVV VVEDGAVAGK LWLFRYWKRD NVHCLTKGWG CYVREKGLRA GDTVSFFHST  120
TCSRFFICCK RTCSFLSPTT SHHGSSVPQP WAARAHHPFS GHATLCLGNK VSDSVPARHA  180
TSLGCAAPTP RRRRRSVVHP EPPEQTTDGV PVILESMALV STPPAAKRVR LFGVYIDDIP  240
PLRPGGEPKQ EFNDP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056080.0AP005608.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0008C07.
GenBankAP0056960.0AP005696.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0063K04.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624416.11e-141putative B3 domain-containing protein Os02g0455900
SwissprotQ6K3B11e-142Y2559_ORYSJ; Putative B3 domain-containing protein Os02g0455900
TrEMBLA0A0E0JZH20.0A0A0E0JZH2_ORYPU; Uncharacterized protein
STRINGOPUNC02G13900.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181381010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.19e-12B3 family protein