PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G13890.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 267aa    MW: 29675.2 Da    PI: 8.8324
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G13890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.4e-1629129198
                      EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.............-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.............rsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                      f+k l+psd  ++  +l +p +++ + g        ++led++g             + W +++  +k+ g + ltkGW  Fv+++gLk+gD+v
  OPUNC02G13890.1  29 FEKFLMPSDLCRNtEWLGIPEEHVWKLG--------MMLEDRDGysviffedgvvpgKLWCFRY--WKSNGVHSLTKGWGCFVREKGLKAGDTV 112
                      899******9998899********9996........788888888888888888899*******..**************************** PP

                      EEEE-SSSEE..EEEEE- CS
               B3  81 vFkldgrsefelvvkvfr 98 
                       F + g+s+++l++  ++
  OPUNC02G13890.1 113 SFFR-GSSCGRLFICCRS 129
                      **95.4499988887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1919138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-1727126IPR015300DNA-binding pseudobarrel domain
CDDcd100178.95E-1728129No hitNo description
SMARTSM010191.3E-629130IPR003340B3 DNA binding domain
PfamPF023621.4E-1229129IPR003340B3 DNA binding domain
PROSITE profilePS5086310.15130131IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAASLPLSAA VVRAEESVDM EVQEMEYLFE KFLMPSDLCR NTEWLGIPEE HVWKLGMMLE  60
DRDGYSVIFF EDGVVPGKLW CFRYWKSNGV HSLTKGWGCF VREKGLKAGD TVSFFRGSSC  120
GRLFICCRSG THATFKSSST LHHGFSMSPL PVRQLVGLES GMLARDVTSL GQARLHVGNQ  180
VGGSAPARHV PSSRRRVEAQ PSRAPLHRRR TTTEHSVPDP MIEMPPILES MFLTAAPPAV  240
KRLRLFGVNI YVLPLSSSGQ PKQESNP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056080.0AP005608.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0008C07.
GenBankAP0056960.0AP005696.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0063K04.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625111.11e-160B3 domain-containing protein Os02g0455800
SwissprotQ6K3B21e-161Y2558_ORYSJ; B3 domain-containing protein Os02g0455800
TrEMBLA0A0E0JZH10.0A0A0E0JZH1_ORYPU; Uncharacterized protein
STRINGOPUNC02G13890.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151591316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.16e-18B3 family protein