PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G12490.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 851aa MW: 94569 Da PI: 4.7679

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G12490.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22	3.8e-07	700	741	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 r +W++ + +l++++ +q+G++ ++ I + ++ ++++q++ ++ OPUNC02G12490.1 700 RAKWSKSDTDLFYQGLQQFGSD-FTMIQHLFP-DKSRNQVRQKF 741 569*****************.*****.******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.12E-9	691	747	IPR009057	Homeodomain-like
Pfam	PF15963	4.9E-25	693	774	No hit	No description
SMART	SM00717	7.0E-8	699	747	IPR001005	SANT/Myb domain
CDD	cd00167	7.15E-6	702	742	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 851 aa Download sequence Send to blast
MIDDEADFGN ITDAAVEGQA AAKFRPKARA KPRKTSLPSR SLAPHPTVES TDEKVETLNT 60 DSTSQEQSVD KKAAPLGCHG SETDGNACAS GGILDTPSED VVTVSLGLVN NPDVTLDSST 120 VCAPSVHKIS QNEENNDDLS HVATHKESMV VSDTQAPPTC RSANTIDDLA DFEGLCDDTQ 180 VEEERIAKFQ PKIRVKTSKA AWKSQRTNQK AGTSTVDVIS QNKEDGKDKA GCNDKQLRPP 240 TRHQKNVQIS YSQAHLGTHN STIDDVANSH SIMEEPAQEE MAAKFQPKLR PKAGGASPGV 300 AETIDAACVA TPEFGVSSVD VVSQDTEEDS HREGLSDDSC QKYMDEEAIT ASGTGPPQDL 360 DANVDLDSHA EMVNPHPDGS PLIIGEPSVE TTVKFQPYVR RKKGKGKSVS FVPPNVSHAH 420 APTDTNSETS NFSHFCKDIA TGESLSNLPQ QASEKVCING EHHPDDQECN DPENQYHEGE 480 PSDHVIEQEP ERDVRETGTS MILRNRGKIQ KDGIPEHTAD DNMDEDFGEP PSDEQDIDSG 540 DEYTARGKQK GRRKSREKNV NKEPSRGTKR TSGDSTIEES QKQKLQKNKS KASSVGQKKT 600 SKDSSVKQPE KKLTHRIRRK RMEEVKTLLE TPDHEIDRMK LSGKEIPSGP SSSNHSISQF 660 GDMDEEYNEQ DNWDNDRTEN HVVENATKLN YHSYMNRQTR AKWSKSDTDL FYQGLQQFGS 720 DFTMIQHLFP DKSRNQVRQK FKAEEKKHPM QVHDAIMHRS RDNLYFKKVI KQLNIEDVQP 780 DINNTHEQEG ASNEEDPGTK NIPGGLINEE ENGLDWSDKE LDMHRSEVEE KEHVSTNDDD 840 DDDLGDVFDW Y

Sequence ? help Back to Top

Protein Sequence Length: 851 aa Download sequence Send to blast

MIDDEADFGN ITDAAVEGQA AAKFRPKARA KPRKTSLPSR SLAPHPTVES TDEKVETLNT  60
DSTSQEQSVD KKAAPLGCHG SETDGNACAS GGILDTPSED VVTVSLGLVN NPDVTLDSST  120
VCAPSVHKIS QNEENNDDLS HVATHKESMV VSDTQAPPTC RSANTIDDLA DFEGLCDDTQ  180
VEEERIAKFQ PKIRVKTSKA AWKSQRTNQK AGTSTVDVIS QNKEDGKDKA GCNDKQLRPP  240
TRHQKNVQIS YSQAHLGTHN STIDDVANSH SIMEEPAQEE MAAKFQPKLR PKAGGASPGV  300
AETIDAACVA TPEFGVSSVD VVSQDTEEDS HREGLSDDSC QKYMDEEAIT ASGTGPPQDL  360
DANVDLDSHA EMVNPHPDGS PLIIGEPSVE TTVKFQPYVR RKKGKGKSVS FVPPNVSHAH  420
APTDTNSETS NFSHFCKDIA TGESLSNLPQ QASEKVCING EHHPDDQECN DPENQYHEGE  480
PSDHVIEQEP ERDVRETGTS MILRNRGKIQ KDGIPEHTAD DNMDEDFGEP PSDEQDIDSG  540
DEYTARGKQK GRRKSREKNV NKEPSRGTKR TSGDSTIEES QKQKLQKNKS KASSVGQKKT  600
SKDSSVKQPE KKLTHRIRRK RMEEVKTLLE TPDHEIDRMK LSGKEIPSGP SSSNHSISQF  660
GDMDEEYNEQ DNWDNDRTEN HVVENATKLN YHSYMNRQTR AKWSKSDTDL FYQGLQQFGS  720
DFTMIQHLFP DKSRNQVRQK FKAEEKKHPM QVHDAIMHRS RDNLYFKKVI KQLNIEDVQP  780
DINNTHEQEG ASNEEDPGTK NIPGGLINEE ENGLDWSDKE LDMHRSEVEE KEHVSTNDDD  840
DDDLGDVFDW Y

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC096856	0.0	AC096856.7 Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633004.1	0.0	uncharacterized protein LOC9267825
TrEMBL	A0A0E0JZ08	0.0	A0A0E0JZ08_ORYPU; Uncharacterized protein
STRING	OPUNC02G12490.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2595	29	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	7e-34	MYB_related family protein