PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G11190.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 408aa    MW: 45382.4 Da    PI: 3.9649
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G11190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.96.2e-17101431127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevd...iykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 
                      l pGf+F+P+d+ lv  +L + +++ +l+++   + e d    + + Pw L  ++ +++e+e yf +++      g r+ r ++  g W ++ +
  OPUNC02G11190.1  10 LSPGFKFEPSDQMLVELFLLPYLRDGELPVAGLvFVEDDhlgGLPLPPWMLLdRHGRGDEDEAYFIAPTGA--GDGARQVRsVAGGGKWVKQRS 101
                      579************************88866543333321146689****73444556668899998876..5688999978889***98877 PP

              NAM  89 ..dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                        + +v+++  +++  + k +L f++ ++++g +t Wvmhey 
  OPUNC02G11190.1 102 egNGDVVVApgGETFRWEKFSLNFHRDDRRSG-STGWVMHEYI 143
                      33344555554555689999*****8777776.9********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-263150IPR003441NAC domain
PROSITE profilePS5100522.20710164IPR003441NAC domain
PfamPF023653.1E-1212143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAAAARSQGL SPGFKFEPSD QMLVELFLLP YLRDGELPVA GLVFVEDDHL GGLPLPPWML  60
LDRHGRGDED EAYFIAPTGA GDGARQVRSV AGGGKWVKQR SEGNGDVVVA PGGETFRWEK  120
FSLNFHRDDR RSGSTGWVMH EYIVSPPAGS AVAASHRATH IAFTGHGQNR KRVPDGYIVV  180
LDDDAAAAAA PPPVSEQSNQ EQEEYAAYTD QIQQQCFVPE QQMSNQYYFP AAAEEEQSNQ  240
EFFVPAAEEQ SSHQFFLPAE EQSNYQPFLP ALEQTTQSNQ EYAYGEQSQC YIMPEQQQQQ  300
SNQEYAYSEQ GQCYIMPEQQ QQSNQEAEYA FACHDEQQQL YFHGDLTSWQ EPLETSSSSS  360
SQQFLGQEQL LLDGLLDGFG EISPEDDAFL DEVEMQNIIA GLSANQSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040010.0AP004001.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1115_D03.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JYJ80.0A0A0E0JYJ8_ORYPU; Uncharacterized protein
STRINGOPUNC02G11190.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.29e-09NAC domain containing protein 47