PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G10720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 532aa MW: 58441 Da PI: 8.1404 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.4 | 4.5e-16 | 182 | 221 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+C+ks+ClkkYCeCf+a+ Cs++C+C+dCkN e OPUNC02G10720.1 182 KHNKGCHCRKSECLKKYCECFQANILCSKNCRCQDCKNFE 221 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 25.124 | 103 | 222 | IPR005172 | CRC domain |
SMART | SM01114 | 7.6E-18 | 182 | 223 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.8E-12 | 185 | 220 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MYSARGLIWL IPPNSPPELA SDSSPPTSSP LFPSASTLLS ARVDQRRGLH LPLPREPPPT 60 GAAVLVRGIL AGSMPPVRPA TVAPPPPQKK PAVPVSRPWP MSFTPHPPPP PSVMTVNAAR 120 VYCDGCHCSP CGNKIENENI RKEAIDTILL RNPLAFQPKI ENGPNTITVR KDNSEAMPPI 180 PKHNKGCHCR KSECLKKYCE CFQANILCSK NCRCQDCKNF EGSEERQALV QMKNASDRDH 240 IQEAANFAPN CATGSLGYKS SPAVRRKNYQ ENSLGEQIRS ETQFQPLTPS CTGFGGDIAS 300 NYQSKSSEMI YRSPLANTIP LIEVNDLVKH ALVACRKAPE AFLTKAGNKV EMQAEKQYQT 360 NDEINNDKNK EQNLKGASLK DIQNKASIDQ QNINETGPHL ANSFKDSRPA SPGTQALMCD 420 ELDTTFGNDD YRSPFVVPSC DQDISKLNAD QERIVLTGLR DYLRVLITRG NINATKFSLE 480 TAMELDSRRH HGATTVISQD KSMSSSCPET LGNNQTSMSN DEQKGKSGDR LY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-19 | 135 | 232 | 47 | 133 | Protein lin-54 homolog |
5fd3_B | 1e-19 | 135 | 232 | 47 | 133 | Protein lin-54 homolog |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004771 | 1e-172 | AP004771.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0413A11. | |||
GenBank | AP014958 | 1e-172 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 1e-172 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623618.1 | 0.0 | protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A0E0JYD3 | 0.0 | A0A0E0JYD3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G10720.2 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 4e-66 | Tesmin/TSO1-like CXC domain-containing protein |