PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G07680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 195aa MW: 21414.1 Da PI: 5.5058 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 51.9 | 2.6e-16 | 4 | 84 | 52 | 128 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkge....ktdWvmheyrl 128 ++++++ yfF+ + +++ + ++r+t sg+Wk tg++k++++ ++ + +k+ +vf+ g+++++ kt W+mheyrl OPUNC02G07680.1 4 YGSDHDRYFFTMATREA---QASRRTTPSGFWKPTGTKKTIFVVagaHEVPTAVKRRFVFHLGHHQQPLgdnnKTPWIMHEYRL 84 4567889*****99976...478899***************99866666679*********665444322234*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.999 | 1 | 118 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-19 | 4 | 118 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-10 | 9 | 84 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MAMYGSDHDR YFFTMATREA QASRRTTPSG FWKPTGTKKT IFVVAGAHEV PTAVKRRFVF 60 HLGHHQQPLG DNNKTPWIMH EYRLINPPRA AAAVAPPSSP VNTIAAMEEI VLCRISNKDL 120 PKPPCLSLHN GLLQFSSVGL SGDDAYNYLI LDLEPLAMEY PNVDIGNVDD DAAAATDDPG 180 DLDEEVDSMP RNHGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 1e-143 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. | |||
GenBank | DQ448817 | 1e-143 | DQ448817.1 Oryza sativa (indica cultivar-group) genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625739.1 | 3e-97 | NAC domain-containing protein 48-like | ||||
TrEMBL | A0A0E0JXA8 | 1e-144 | A0A0E0JXA8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G07680.1 | 1e-145 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16540 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-11 | NAC domain containing protein 25 |