PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G05140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CO-like | ||||||||
Protein Properties | Length: 405aa MW: 41931.1 Da PI: 6.129 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.6 | 1.1e-07 | 60 | 105 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e ++ C+ + lC+ C + +H H++vp+ OPUNC02G05140.1 60 VWVCEVCELAPAAVTCKADAAALCAACDSDIHDAnplarrHERVPV 105 689*****************************44788888999986 PP | |||||||
2 | CCT | 67.6 | 3.3e-23 | 319 | 362 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ +l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+a OPUNC02G05140.1 319 RASRLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRA 362 899***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 0.032 | 13 | 62 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.608 | 58 | 105 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-5 | 59 | 105 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.8E-8 | 63 | 105 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 3.6E-17 | 319 | 361 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.638 | 319 | 361 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MEMELGLGRY WGFGGRRCGA CAVAPAAVHC RTCDGGGGGG GGYLCAGCDA EHGRAGHERV 60 WVCEVCELAP AAVTCKADAA ALCAACDSDI HDANPLARRH ERVPVQPIGS ASAAAAPDAL 120 LFGGEKDVAA VDLTTGAVGG GVGKEVKLDF LFADFMDPYL GGSPELARFP HADSVVPNGS 180 TGPAMELGFA AVVKPSYSSY TAASLGNSVS ACSSLPRSRQ ESLDLALAYS IDHLHLQFII 240 LSIEQGSSSE VGLVPDAICG GGGGIIELDF AQSKAAYLPY ASTPSHSMSS SMDVGVAPEM 300 SDGAAAGRAY AAAAAAEGRA SRLMRYREKR KNRRFEKTIR YASRKAYAET RPRIKGRFAK 360 RADDHDGDNH GETDAASPAP AAAAPPPPQQ QTMLDFAGYG VVPTF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004838 | 0.0 | AP004838.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0504A05. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623284.1 | 1e-156 | zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | A0A0E0JWB1 | 0.0 | A0A0E0JWB1_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G05140.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3844 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 1e-19 | CONSTANS-like 4 |