PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G04800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 331aa MW: 35770 Da PI: 8.9923 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 125.2 | 2.7e-39 | 72 | 149 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC ++l +k+yhr+h+vCe+hsk p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL +hn+rrrk+q+ OPUNC02G04800.1 72 RCQVEGCGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLYDHNARRRKPQT 149 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.6E-33 | 65 | 134 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.667 | 70 | 147 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-38 | 71 | 153 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-30 | 73 | 146 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MDGMAPPKPT SPSSPPLLWD WADDAVPGSS SGEVVAAAAA AAHPGRRRKE KRARAAEEGG 60 GGGGGGGGGE VRCQVEGCGV ELVGVKDYHR KHRVCEAHSK FPRVVVAGQE RRFCQQCSRF 120 HALSEFDQKK RSCRRRLYDH NARRRKPQTD VFSYASGRPP SSLLFDDSRQ ISFVWNKAPL 180 NHVRPFAISP WESSSEIGTT DGHIYMDKPH LSKSLPAFNT NIDELLRMKG PDASLTASKF 240 DGAPDLQRAL SLLSSSSCGL PDPVQQASHV IQFTGASQNN RELPPLNGGN SASASCANVQ 300 SIAQPAQLVR FTMDASSNAC QSNFFSLNQI N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-25 | 63 | 146 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 50 | RRRKEK |
2 | 128 | 145 | KKRSCRRRLYDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061484 | 0.0 | AK061484.1 Oryza sativa Japonica Group cDNA clone:006-308-H09, full insert sequence. | |||
GenBank | AK068702 | 0.0 | AK068702.1 Oryza sativa Japonica Group cDNA clone:J013159I15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623076.1 | 0.0 | squamosa promoter-binding-like protein 4 isoform X2 | ||||
Swissprot | Q6H509 | 1e-129 | SPL4_ORYSJ; Squamosa promoter-binding-like protein 4 | ||||
TrEMBL | A0A0E0JW69 | 0.0 | A0A0E0JW69_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G04800.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6271 | 29 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 5e-38 | squamosa promoter binding protein-like 2 |
Publications ? help Back to Top | |||
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