PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC02G04560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 229aa MW: 25480 Da PI: 6.6259 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87 | 1e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstgk++ey+s OPUNC02G04560.1 9 KRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 39.8 | 1.9e-14 | 80 | 151 | 9 | 85 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 e ++ ++ e++++++e+e+L +R++ G+dL++L+l +++ LeqqLe s++ K++ll +q+++l++k OPUNC02G04560.1 80 EEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLTNLTLADINDLEQQLEFSVT-----KHQLLNQQLDNLRRKAA 151 45567788889******************************************96.....9*************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.198 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.42E-43 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 4.71E-32 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.4E-12 | 81 | 150 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 7.23 | 85 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0019252 | Biological Process | starch biosynthetic process | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MGRGKIEIKR IENATNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGKMFEYCSP 60 TCSLRELIEH FQTVTNTHFE EINHDQQIFV EMTRMRNEME KLDGGIRRFT GDDLTNLTLA 120 DINDLEQQLE FSVTKHQLLN QQLDNLRRKA AVGGDVKTMV EMAPVLSMLT AAPAYYGEES 180 SSTALQLTPP LHAVDAAAGF RLQPTQPNLQ DPGCSSSSFH AAGHGLQLW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-18 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 2e-18 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 2e-18 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 2e-18 | 1 | 59 | 1 | 59 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK109522 | 0.0 | AK109522.1 Oryza sativa Japonica Group cDNA clone:002-115-F04, full insert sequence. | |||
GenBank | DQ004266 | 0.0 | DQ004266.1 Oryza sativa (japonica cultivar-group) FST (FST) mRNA, complete cds. | |||
GenBank | FJ750933 | 0.0 | FJ750933.1 Oryza sativa clone KCS006F06 MADS-box transcription factor 29 mRNA, complete cds. | |||
GenBank | JX025003 | 0.0 | JX025003.1 Oryza sativa Japonica Group MADS-domain transcription factor variant b (FST) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624837.1 | 1e-148 | MADS-box transcription factor 29 isoform X1 | ||||
Refseq | XP_025879036.1 | 1e-148 | MADS-box transcription factor 29 isoform X1 | ||||
Swissprot | Q6H711 | 1e-149 | MAD29_ORYSJ; MADS-box transcription factor 29 | ||||
TrEMBL | A0A0E0JW39 | 1e-171 | A0A0E0JW39_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G04560.1 | 1e-172 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G20240.1 | 3e-40 | MIKC_MADS family protein |