PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G04080.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 298aa    MW: 32210.3 Da    PI: 5.5847
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G04080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.53e-223478145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     k ienk  rqv fskRr+g++KKA+ELSvLC+a+vav+ fs+ g+
  OPUNC02G04080.1 34 KLIENKDARQVCFSKRREGVFKKASELSVLCGARVAVVFFSPAGR 78
                     569***************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.0062686IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-282685IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-262795IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-172848IPR002100Transcription factor, MADS-box
CDDcd002652.59E-312995No hitNo description
PfamPF003192.8E-243682IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-174863IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-176384IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTTTAKAAAE MDVVGGGEGR RRKRTRGRQK IEMKLIENKD ARQVCFSKRR EGVFKKASEL  60
SVLCGARVAV VFFSPAGRPH CFGHPSVHAV ADRFLLGRST AVAAVAATAE EEEEAVVREF  120
NRMEERLTDA LEAEARRRDA LDEAARAAGV WDDADVRRAG LADLLSMLAA LERVQAEVSE  180
RVHEIIVEET MTHYTAAAAA NIIDYLDAGP FVSHSPGSHD AVVMEDTTVK LVGGDVVHAP  240
PPPPFAPMIM PPPLPAQFSH GFGYSDLAAG YGYNNLDYGH GAACETEGFH NATACDFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878655.11e-147agamous-like MADS-box protein AGL28
TrEMBLA0A0E0JVX20.0A0A0E0JVX2_ORYPU; Uncharacterized protein
STRINGOPUNC02G04080.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.18e-22AGAMOUS-like 29