PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G02570.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 280aa    MW: 30415.3 Da    PI: 9.91
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G02570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1283.5e-40182258278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      CqvegC++dls+ak yhr+h+vCe hsk+ +v+v+gle+rfCqqCsrfh l efD++krsCrrrL++hn+rrrk+q+
  OPUNC02G02570.1 182 CQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVVVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKPQP 258
                      **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-33174243IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.735179256IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-39180261IPR004333Transcription factor, SBP-box
PfamPF031101.9E-31182255IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGSFGMDWNQ KSSVLWDWEN MPPIGNNATE NPKNVMLAES KHEGVGVDIG HDSAHSSGGT  60
FSSGSEIGYG SSKSSISASI DSPSKVGNTI ELNFASVKET DKNMDKGKCK VDDTGTSRSS  120
VVAASRVEPL IGLKLGKRTY FEDVCGGQNV KSSPSGVTVA TPSPGLAKKV KVAQQNTQNP  180
HCQVEGCNVD LSSAKPYHRK HRVCEPHSKT LKVVVAGLER RFCQQCSRFH GLAEFDQKKR  240
SCRRRLHDHN ARRRKPQPEA ISSSRLSTIL YGGTKILFAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-281822551184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237254KKRSCRRRLHDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429840.0AK242984.1 Oryza sativa Japonica Group cDNA, clone: J090094N03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626886.11e-163squamosa promoter-binding-like protein 3 isoform X6
RefseqXP_025878956.11e-163squamosa promoter-binding-like protein 3 isoform X5
SwissprotA2X0Q61e-163SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z81e-163SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A0E0JVC90.0A0A0E0JVC9_ORYPU; Uncharacterized protein
STRINGOPUNC02G02570.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.38e-46squamosa promoter binding protein-like 2