PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G02320.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 628aa    MW: 66103.6 Da    PI: 6.6591
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G02320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.51.3e-28395446152
           RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      aek+++le+l+k+Fs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki+++
  OPUNC02G02320.1 395 AEKSVTLEELQKHFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKV 446
                      5899*********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.632385466IPR003035RWP-RK domain
PfamPF020422.3E-26398446IPR003035RWP-RK domain
SuperFamilySSF542776.21E-19515588No hitNo description
SMARTSM006665.9E-17521616IPR000270PB1 domain
PROSITE profilePS5174515.051521616IPR000270PB1 domain
PfamPF005642.4E-11522591IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.8E-22522588No hitNo description
CDDcd064071.41E-34522615No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MVVVEVEADM ERVLGHFNLL LQSGGGGAGG DRGSGRSSGS EGGGGGGGGG GGSPAAVAVK  60
ERIARALRLY KDAAGGGGGG GWMVQVWAPA RDGARRVLAT RGQPFVLASQ CHRLFQYRTI  120
SLTRVFPVGG AAAADEQGLP ARAFDTGAPE WTPNVQCYGS GEYARISYAL IYDIQGSLAL  180
PILDPRRREL PPCPAGSDVR GFRDACVEHH LRRGQGLVGT ASAAAARAPG GFCADVARCS  240
KDDYPLAHYA GMYGLAGCLV LRAELNAAAM ADAAGDEEDC VVLELFLPPD CTGIAEQKAA  300
VDAISATIKQ CSSNLKAIVI SNLEDLFLDA MADGDQQLRH EMHDLGDDQR CSDEEDLQLR  360
ENTNIGEFNI HNTDQIRNED PTSQVGKNKT RRGKAEKSVT LEELQKHFSG SLKDAARSLG  420
VCPTTMKRIC RQHGIPRWPF RKISKVNRSL DKMKRVMESV NCSASPPVAM PAHPALLLPP  480
PPRPSLSSTV GEASSHGSCQ APSHAKTALQ KPPSCGNGDG VVTIKASHRG DIIRFRVPCS  540
AGVAAVKAEV AKRLSLDAGA FDVKYLDDDH EWVLLSCDAD FQECLDVIPA LSSTSASAKS  600
GSGAAAPVVR LMVQEVADNI GSSCASSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13752SGSEGGGGGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054740.0AP005474.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0081C13.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627710.10.0protein NLP3-like
TrEMBLA0A0E0JV980.0A0A0E0JV98_ORYPU; Uncharacterized protein
STRINGOPUNC02G02320.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62692939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.16e-46Nin-like family protein