PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G01770.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BES1
Protein Properties Length: 716aa    MW: 80147 Da    PI: 7.6368
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G01770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822171.44.8e-53572081142
           DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspes 92 
                      gg+g++++++E+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r++s+pl   +++  g ++ +s+e+
  OPUNC02G01770.1  57 GGGGEREREREKERTKLRERHRRAITSRMLSGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRASSQPLhpPAPQLPGIFHVNSVET 150
                      68999**********************************************************************998999************* PP

           DUF822  93 slq.sslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsv 142
                      ++  s+l+s+a+ +p++s+++++++++++spsslds+ +a++        ++++v+s 
  OPUNC02G01770.1 151 PSFtSVLNSYAIGTPLNSQASMLQTDDSLSPSSLDSVVVAEQsiknekyGNSYSVSSL 208
                      *99899*********************************9987776655444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.1E-4958211IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514457.22E-167229711IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.3E-167229679IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.4E-76253631IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-49267281IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-49288306IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-49410432IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-49483502IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-49517533IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-49534545IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-49552575IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-49590612IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MSLKHPHSPM LDGDPPPHRR PRGFGSTPSP SPVAADPSPS PSPAAAAPPP PPRRRGGGGG  60
EREREREKER TKLRERHRRA ITSRMLSGLR QHGNFPLPAR ADMNDVLAAL ARAAGWTVHP  120
DGTTFRASSQ PLHPPAPQLP GIFHVNSVET PSFTSVLNSY AIGTPLNSQA SMLQTDDSLS  180
PSSLDSVVVA EQSIKNEKYG NSYSVSSLNC LENDQLIRAS AALAGDYTRT PYIPVYASLP  240
MGVINSHCQL IDPEGIRAEL MHLKSLNVDG VIVDCWWGIV EAWTPHKYEW SGYRDLFGII  300
KEFKLKVQRV SFTKLLKVVL SFHGSGETGS GGVSLPKWVM EIAQENQDVF FTDREGRRNV  360
ECLSWGIDKE RVLRGRTGIE AYFDFMRSFH MEFRNLTEEG LISAIEIGLG VSGELKYPSC  420
PERMGWRYPG IGEFQCYDRY MQKNLRQAAL SRGHLFWARG PDNAGYYNSR PHETGFFCDG  480
GDYDSYYGRF FLNWYSGILI DHVDQVLSLA TLAFGGVETV VKIPSIYWWY RTASHAAELT  540
AGFYNPTNRD GYSPVFRMLK KHSVILKFVC YGPEFTIQEN NEAFADPEGL TWQVMNAAWD  600
HGLSTSIESA LPCLDGEMYS QILDTAKPRN DPDRHHVSFF AYRQLPSFLL QRDVCFSELG  660
NFVKCMHDGS LNKIVVRVRI IITHQSGSSA LEPLMQRLTV LCIRGVSTHP IKILLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12023266711442Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200490.0AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622759.10.0beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0E0JV310.0A0A0E0JV31_ORYPU; Beta-amylase
STRINGOPUNC02G01770.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]