PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G00040.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 463aa MW: 52169.2 Da PI: 7.6555 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.6 | 3.4e-28 | 37 | 86 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++g+lye++s OPUNC02G00040.2 37 RIEDATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGRLYEFAS 86 8***********************************************86 PP | |||||||
2 | K-box | 74.1 | 4e-25 | 111 | 201 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +e+ +++++e++ L k+ie ++ + +llGe+L+s+s++eLq+Le qLeksl +iR+kK+++l++qi el++ke +l +en+ Lr +++ OPUNC02G00040.2 111 GDESCIQKWRTEATTLGKKIEAIEGYKSKLLGEGLGSCSVQELQELEVQLEKSLCSIRQKKQKMLMDQILELREKEMNLLKENMVLRDQWK 201 567889*********************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.997 | 28 | 88 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.1E-36 | 28 | 87 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 30 | 84 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-29 | 30 | 109 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-28 | 30 | 50 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.9E-26 | 37 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.64E-35 | 38 | 105 | No hit | No description |
PRINTS | PR00404 | 6.0E-28 | 50 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-28 | 65 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.6E-24 | 115 | 200 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.843 | 116 | 206 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MLMAGGGMQQ QETAGSEDEK QMEVRVRGRR GRREMRRIED ATSRQVTFSK RRSGLLKKAF 60 ELSVLCDAEV ALIVFSPRGR LYEFASASSD LQRTIDRYLN HTKNSSAHEK GDESCIQKWR 120 TEATTLGKKI EAIEGYKSKL LGEGLGSCSV QELQELEVQL EKSLCSIRQK KQKMLMDQIL 180 ELREKEMNLL KENMVLRDQW KALSSPWSSV VELKNKQLAD DHRRYEEDYY CSNGGVRDDD 240 VETDLAAVNQ APKVLKKGKK KQAKDELDRQ KQAEKKRRRL EKALANSAAI ISELEKKKQK 300 KREEQQRLDE EGAAIAEAVA LHVLIGEDSD EPCHLMLNKH RRCNNWDHEA IAGFDFAVDA 360 QGADIYPPDG LIQCADPKGR CIDWGIGQPL PSWGEVKDLQ LQAPCYQGMF HQSVTCPGFI 420 AAQAVSSLQI GGDSSDITSP SQGATVVNRM LAGTNRLNLY REI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n6j_A | 2e-15 | 30 | 109 | 2 | 76 | Myocyte-specific enhancer factor 2B |
1n6j_B | 2e-15 | 30 | 109 | 2 | 76 | Myocyte-specific enhancer factor 2B |
1tqe_P | 2e-15 | 30 | 109 | 3 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-15 | 30 | 109 | 3 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-15 | 30 | 109 | 3 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-15 | 30 | 109 | 3 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-15 | 30 | 109 | 3 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-15 | 30 | 109 | 3 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-15 | 30 | 109 | 3 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-15 | 30 | 109 | 3 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-15 | 30 | 109 | 3 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-15 | 30 | 109 | 3 | 77 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 258 | 278 | KKKQAKDELDRQKQAEKKRRR |
2 | 275 | 279 | KRRRL |
3 | 276 | 299 | RRRLEKALANSAAIISELEKKKQK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121824 | 0.0 | AK121824.1 Oryza sativa Japonica Group cDNA clone:J033099F22, full insert sequence. | |||
GenBank | AP004049 | 0.0 | AP004049.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C06. | |||
GenBank | AP006720 | 0.0 | AP006720.1 Oryza sativa Japonica Group genomic DNA, chromosome 2, clone:OJA1212_C06. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0JUE9 | 0.0 | A0A0E0JUE9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G00040.2 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 7e-51 | AGAMOUS-like 20 |