PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 463aa    MW: 52169.2 Da    PI: 7.6555
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G00040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.63.4e-283786251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++g+lye++s
  OPUNC02G00040.1 37 RIEDATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGRLYEFAS 86
                     8***********************************************86 PP

2K-box74.14e-25111201999
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       +e+  +++++e++ L k+ie ++  + +llGe+L+s+s++eLq+Le qLeksl +iR+kK+++l++qi el++ke +l +en+ Lr +++
  OPUNC02G00040.1 111 GDESCIQKWRTEATTLGKKIEAIEGYKSKLLGEGLGSCSVQELQELEVQLEKSLCSIRQKKQKMLMDQILELREKEMNLLKENMVLRDQWK 201
                      567889*********************************************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.9972888IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-362887IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003084IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-2930109IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-283050IPR002100Transcription factor, MADS-box
PfamPF003198.9E-263784IPR002100Transcription factor, MADS-box
CDDcd002652.64E-3538105No hitNo description
PRINTSPR004046.0E-285065IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-286586IPR002100Transcription factor, MADS-box
PfamPF014862.6E-24115200IPR002487Transcription factor, K-box
PROSITE profilePS5129713.843116206IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MLMAGGGMQQ QETAGSEDEK QMEVRVRGRR GRREMRRIED ATSRQVTFSK RRSGLLKKAF  60
ELSVLCDAEV ALIVFSPRGR LYEFASASSD LQRTIDRYLN HTKNSSAHEK GDESCIQKWR  120
TEATTLGKKI EAIEGYKSKL LGEGLGSCSV QELQELEVQL EKSLCSIRQK KQKMLMDQIL  180
ELREKEMNLL KENMVLRDQW KALSSPWSSV VELKNKQLAD DHRRYEEDYY CSNGGVRDDD  240
VETDLAAVNQ APKVLKKGKK KQAKDELDRQ KQAEKKRRRL EKALANSAAI ISELEKKKQK  300
KREEQQRLDE EGAAIAEAVA LHVLIGEDSD EPCHLMLNKH RRCNNWDHEA IAGFDFAVDA  360
QGADIYPPDG LIQCADPKGR CIDWGIGQPL PSWGEVKDLQ LQAPCYQGMF HQSVTCPGFI  420
AAQAVSSLQI GGDSSDITSP SQGATVVNRM LAGTNRLNLY REI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n6j_A2e-1530109276Myocyte-specific enhancer factor 2B
1n6j_B2e-1530109276Myocyte-specific enhancer factor 2B
1tqe_P2e-1530109377Myocyte-specific enhancer factor 2B
1tqe_Q2e-1530109377Myocyte-specific enhancer factor 2B
1tqe_R2e-1530109377Myocyte-specific enhancer factor 2B
1tqe_S2e-1530109377Myocyte-specific enhancer factor 2B
6c9l_A2e-1530109377Myocyte-specific enhancer factor 2B
6c9l_B2e-1530109377Myocyte-specific enhancer factor 2B
6c9l_C2e-1530109377Myocyte-specific enhancer factor 2B
6c9l_D2e-1530109377Myocyte-specific enhancer factor 2B
6c9l_E2e-1530109377Myocyte-specific enhancer factor 2B
6c9l_F2e-1530109377Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258278KKKQAKDELDRQKQAEKKRRR
2275279KRRRL
3276299RRRLEKALANSAAIISELEKKKQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218240.0AK121824.1 Oryza sativa Japonica Group cDNA clone:J033099F22, full insert sequence.
GenBankAP0040490.0AP004049.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C06.
GenBankAP0067200.0AP006720.1 Oryza sativa Japonica Group genomic DNA, chromosome 2, clone:OJA1212_C06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JUE90.0A0A0E0JUE9_ORYPU; Uncharacterized protein
STRINGOPUNC02G00040.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38051616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.17e-51AGAMOUS-like 20