PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G44670.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 196aa    MW: 21739 Da    PI: 10.3761
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G44670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.51.3e-212269249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     rie++  rqv fskRr+g +KKA+ELS+LC a+va ++fs+ gk y +
  OPUNC01G44670.1 22 RIESEEARQVCFSKRRAGFFKKASELSILCSADVAAVVFSPAGKAYSF 69
                     8*******************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-301372IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.1561373IPR002100Transcription factor, MADS-box
CDDcd002653.11E-391486No hitNo description
SuperFamilySSF554554.19E-271488IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-201535IPR002100Transcription factor, MADS-box
PfamPF003192.8E-252269IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-203550IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-205071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVAAAPARRR PSLGRQKIEI RRIESEEARQ VCFSKRRAGF FKKASELSIL CSADVAAVVF  60
SPAGKAYSFG HPSVECLLER FLQESSPATR VRVNGGMVGE LNRQYGDLRA MVEAHKARRE  120
RAEEKIEMER AAGRWTEPDV GRMSPEELMA FGTGLMAVQA AVSARADQML RDALLIGRRP  180
PTTTTTAAGF FHMPHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-1713104191MEF2C
5f28_B9e-1713104191MEF2C
5f28_C9e-1713104191MEF2C
5f28_D9e-1713104191MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036271e-114AP003627.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0459B04.
GenBankAP0149571e-114AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-114CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640475.11e-117agamous-like MADS-box protein AGL29
TrEMBLA0A0E0JUB41e-140A0A0E0JUB4_ORYPU; Uncharacterized protein
STRINGOPUNC01G44670.11e-141(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-23AGAMOUS-like 62