PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G44650.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 274aa    MW: 30499 Da    PI: 9.1895
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G44650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.4e-1463110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT++Ed +lv  v++lG ++W+  a+  g+ R++k+c++rw +yl
  OPUNC01G44650.1  63 KGPWTEQEDVQLVWFVRLLGERRWDFLAKVSGLQRSGKSCRLRWVNYL 110
                      79********************************************97 PP
2Myb_DNA-binding58.91.1e-18116161148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+++eE+   v+++++lG++ W++Ia+ m+ gRt++++k++w+++l
  OPUNC01G44650.1 116 RGRMSPEEERMVVQLHAKLGNR-WSRIAKSMP-GRTDNEIKNYWRTHL 161
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.98258110IPR017930Myb domain
SMARTSM007177.3E-1162112IPR001005SANT/Myb domain
SuperFamilySSF466891.16E-2762157IPR009057Homeodomain-like
PfamPF002491.8E-1263110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-1764117IPR009057Homeodomain-like
CDDcd001672.39E-865110No hitNo description
PROSITE profilePS5129426.873111165IPR017930Myb domain
SMARTSM007178.0E-18115163IPR001005SANT/Myb domain
PfamPF002491.2E-16116161IPR001005SANT/Myb domain
CDDcd001671.30E-12118161No hitNo description
Gene3DG3DSA:1.10.10.609.7E-25118163IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MVVAGQKQGR SSSSVHYSSS SSSSPSSSSS SVVQLGHHQR PQGEAPLIGI KATGAGGGGI  60
MRKGPWTEQE DVQLVWFVRL LGERRWDFLA KVSGLQRSGK SCRLRWVNYL HPGLKRGRMS  120
PEEERMVVQL HAKLGNRWSR IAKSMPGRTD NEIKNYWRTH LRKLKLQANK QQQQSSISIS  180
DDDDRNSSSS SSSNSNSNLQ QQQPAAEDES GRASQDHHQL FLHPLWNDDI VDCWSSSTHV  240
VAPDPAPMPM PMPASPLWDI DDAFCSDYSL PLWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-27631634103MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-266316358157MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-266316358157MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-27601631103C-Myb DNA-Binding Domain
1msf_C8e-27601631103C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3985811e-172AY398581.1 Oryza sativa (indica cultivar-group) Myb factor protein (Myb) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621159.11e-115transcription factor MYB59
TrEMBLA0A0E0JUB20.0A0A0E0JUB2_ORYPU; Uncharacterized protein
STRINGOPUNC01G44650.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-55myb domain protein 59