PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G41430.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 328aa    MW: 34820 Da    PI: 7.0251
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G41430.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.63.4e-2353123170
         trihelix   1 rWtkqevlaLiearremeerlrrgklk.kplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                      rWt++e+l+L++arr me+r rr+ +    +W+ vs+++r++g+er+p qC+++w nl+++ kki ++ek+
  OPUNC01G41430.2  53 RWTRHETLVLLQARRAMEHRGRRSPQPvRLKWAVVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEKN 123
                      8**********************97764889**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.89946111IPR017877Myb-like domain
SuperFamilySSF466898.97E-550113IPR009057Homeodomain-like
PfamPF138371.0E-953121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010216Biological Processmaintenance of DNA methylation
GO:0051567Biological Processhistone H3-K9 methylation
GO:0005634Cellular Componentnucleus
GO:0005694Cellular Componentchromosome
GO:0008270Molecular Functionzinc ion binding
GO:0008327Molecular Functionmethyl-CpG binding
GO:0010385Molecular Functiondouble-stranded methylated DNA binding
GO:0010428Molecular Functionmethyl-CpNpG binding
GO:0010429Molecular Functionmethyl-CpNpN binding
GO:0042393Molecular Functionhistone binding
GO:0046974Molecular Functionhistone methyltransferase activity (H3-K9 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAADKSQAGG LLDACRSIEV RESAAAAAMS GAGNASSPAA AAGTGTPRSR LPRWTRHETL  60
VLLQARRAME HRGRRSPQPV RLKWAVVSAY CRRHGVERGP MQCRKRWGNL SWDLKKIVAW  120
EKNLAAVVLG AGDNAVAGEG EPGAEAPRRL ESFWDMRGEQ RRARQLPSSF DREVYDALVG  180
CHDAAPPSDF GEDLADGDDA EADELPPPPP PPPLMVMPIS ATVSAKRGGA ASDKNSTSQH  240
DGGGLKDSEA TYGAGVGAEE GTTTATATAT TTSIGRQVIE ALERGNRMLG DQLEAQRAIW  300
DAEREQRAAL LAAVDKLAGA VCRIADKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629515.11e-164trihelix transcription factor ASR3
TrEMBLA0A0E0JT230.0A0A0E0JT23_ORYPU; Uncharacterized protein
STRINGOGLUM01G46800.11e-167(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.15e-32Trihelix family protein