PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G41070.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 378aa    MW: 39842.2 Da    PI: 8.3477
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G41070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.62.3e-4067144278
                      -SSTT-----TT-.-HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlsea.keyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      C vegC+adls++ ++yhrrhkvCe+hsk++vv+v+g++qrfCqqCsrfh l efDeekrsCr+rL++hn+rrrk+q+
  OPUNC01G41070.1  67 CSVEGCAADLSKCvRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKPQP 144
                      ***********9879************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.4E-3361129IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.48764142IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-3765147IPR004333Transcription factor, SBP-box
PfamPF031106.4E-2967141IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDWDAKMPSW DLGTVVGPSG GGGGGGGGAL DLKLGAPTSW KTTTSAAAAA ASASASAPLP  60
QAAVPACSVE GCAADLSKCV RDYHRRHKVC EAHSKTAVVT VAGQQQRFCQ QCSRFHLLGE  120
FDEEKRSCRK RLDGHNKRRR KPQPDPLNPG NLFANHHGAT RFTSYPQIFS TASMSPQEAK  180
WPANVVKTEA ADVFQEPYYH ALHLNGAAAS IFHHGGNKAR KHHFPFLTTD HHGGDAAAAP  240
PFGCQPFTIT PSSESRSSSS SRHSNGKIFA HDGGLDNCAL SLLSDNPTPT AQITIPQPLG  300
GGGGQYGGGD VSLTGLSYVR MDGKDTSILA KSATATTTVT TTPTTSAQLQ YHGYYHHHVS  360
ADQGSSDAAI QALPFSSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-27671411184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124141KRSCRKRLDGHNKRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0625810.0AK062581.1 Oryza sativa Japonica Group cDNA clone:001-100-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611358.10.0squamosa promoter-binding-like protein 2
SwissprotQ0JGI10.0SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLA0A0E0JSY20.0A0A0E0JSY2_ORYPU; Uncharacterized protein
STRINGOPUNC01G41070.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104563038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.19e-29SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]